ENSXMAG00000016285 (Xiphophorus maculatus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSXMAG00000016285 T217261_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Pbx1
M00513_2.00 		Mus musculus
NNDKANNNN
NNNNTMHNN		 PBM
Berger et al.(2008)
Pbx1_3203 		0.867 1.000
PBX1
M05362_2.00 		Homo sapiens
NTGATKGAYR
YRTCMATCAN		 SELEX
Yin et al.(2017)
PBX1_eDBD_HT-SELEX 		0.867 1.000
PBX1
M05364_2.00 		Homo sapiens
DTGMTKGRYN
NRYCMAKCAH		 SELEX
Yin et al.(2017)
PBX1_FL_HT-SELEX 		0.867 1.000
PBX1
M02685_2.00 		Homo sapiens
WWTGATTGATND
HNATCAATCAWW		 SELEX
Mathelier et al.(2014)
MA0070.1 		0.867 1.000
PBX1
M09164_2.00 		Homo sapiens
DGABTGRCRG
CYGYCAVTCH		 Misc
Kulakovskiy et al.(2013)
PBX1_HUMAN.H11MO.0.A 		0.867 1.000
PBX1
M09561_2.00 		Homo sapiens
TGABTGACAGSC
GSCTGTCAVTCA		 Misc
Heinz et al.(2010)
MCF7-PBX1_GSE28007 		0.867 1.000
PBX1
M10748_2.00 		Homo sapiens
WTKATTRDT
AHYAATMAW		 Transfac
Matys et al.(2006)
V$PBX1_01 		0.867 1.000
PBX1
M10749_2.00 		Homo sapiens
DNHTTGATTGATKDB
VHMATCAATCAADNH		 Transfac
Matys et al.(2006)
V$PBX1_02 		0.867 1.000
PBX1
M10750_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_03 		0.867 1.000
PBX1
M10751_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_05 		0.867 1.000
PBX1
M10752_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_10 		0.867 1.000
PBX1
M10753_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_Q3 		0.867 1.000
PBX1
M05363_2.00 		Homo sapiens
DTGAKKGAYG
CRTCMMTCAH		 SELEX
Yin et al.(2017)
PBX1_eDBD_Methyl-HT-SELEX 		0.867 1.000
PBX1
M05365_2.00 		Homo sapiens
MRTCAATCMH
DKGATTGAYK		 SELEX
Yin et al.(2017)
PBX1_FL_Methyl-HT-SELEX 		0.867 1.000
pbx4
M02110_2.00 		Tetraodon nigroviridis
TTGAYGDV
BHCRTCAA		 PBM
Weirauch et al.(2014)
pTH6425 		0.867 0.982
PBX2
M08134_2.00 		Homo sapiens
NWGAKTGACABN
NVTGTCAMTCWN		 ChIP-seq
Mathelier et al.(2014)
MA1113.1 		0.867 0.965
PBX2
M09165_2.00 		Homo sapiens
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_HUMAN.H11MO.0.C 		0.867 0.965
Pbx2
M09199_2.00 		Mus musculus
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_MOUSE.H11MO.0.C 		0.867 0.965
Pbx3
M09205_2.00 		Mus musculus
BBBTGATTGRYNDN
NHNRYCAATCAVVV		 Misc
Kulakovskiy et al.(2013)
PBX3_MOUSE.H11MO.0.A 		0.865 0.965
exd
M06487_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Mathelier et al.(2014)
MA0222.1 		0.822 0.947
exd
M06243_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Zhu et al.(2011)
Exd_Cell_FBgn0000611 		0.822 0.947
exd
M06244_2.00 		Drosophila melanogaster
NWRNWYNAAA
TTTNRWNYWN		 B1H
Zhu et al.(2011)
exd_FlyReg_FBgn0000611 		0.822 0.947
exd
M06245_2.00 		Drosophila melanogaster
NDTGAYRW
WYRTCAHN		 B1H
Zhu et al.(2011)
exd_SOLEXA_2_FBgn0000611 		0.822 0.947
exd
M06246_2.00 		Drosophila melanogaster
NNDTGAYR
YRTCAHNN		 B1H
Zhu et al.(2011)
Exd_SOLEXA_FBgn0000611 		0.822 0.947
PBX4
M00277_2.00 		Homo sapiens
NNDDWHDNNN
NNNHDWHHNN		 PBM
Barrera et al.(2016)
PBX4_REF 		0.815 0.877
PBX4
M10649_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX4_01 		0.815 0.877
CBG10835
M01243_2.00 		Caenorhabditis briggsae
NNTKAYDNN
NNHRTMANN		 PBM
Lambert et al.(2019)
pTH11444 		0.691 0.579
PBX4
M00276_2.00 		Homo sapiens
NYTAATTADNN
NNHTAATTARN		 PBM
Barrera et al.(2016)
PBX4_R215Q 		0.677 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSXMAP00000016318 Homeodomain 146 205

Links

Other Homeodomain family TFs
Other Xiphophorus maculatus TFs

435 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL017280 Aedes aegypti AAEL017280 N
AALB003072 Anopheles albimanus AALB003072 N
AARA000452 Anopheles arabiensis AARA000452 N
AATE006796 Anopheles atroparvus AATE006796 N
ACEP26642 Atta cephalotes ACEP26642 N
ACHR005336 Anopheles christyi ACHR005336 N
ACUA025715 Anopheles culicifacies ACUA025715 N
ACYPI006497 Acyrthosiphon pisum ACYPI006497 N
ADAC008556 Anopheles darlingi ADAC008556 N
ADIR002498 Anopheles dirus ADIR002498 N
AEPI003661 Anopheles epiroticus AEPI003661 N
AFAF010393 Anopheles farauti AFAF010393 N
AFUN009891 Anopheles funestus AFUN009891 N
AGAP001786 Anopheles gambiae AGAP001786 N
AMAM004700 Anopheles maculatus AMAM004700 N
AMEM013442 Anopheles merus AMEM013442 N
AMIN000696 Anopheles minimus AMIN000696 N
AQUA004105 Anopheles quadriannulatus AQUA004105 N
ASTEI11512 Anopheles stephensi ASTEI11512 N
A_08377 Schistosoma haematobium A_08377 N
BGIBMGA010273 Bombyx mori BGIBMGA010273 N
BGLB000541 Biomphalaria glabrata BGLB000541 I
BXY_0663500 Bursaphelenchus xylophilus BXY_0663500 N
Cflo_01219--XP_395512.3_APIME Camponotus floridanus Cflo_01219--XP_395512.3_APIME N
CGI_10006980 Crassostrea gigas CGI_10006980 I
CLEC012210 Cimex lectularius CLEC012210 N
CPIJ010152 Culex quinquefasciatus CPIJ010152 N
CpipJ_CPIJ010152 Culex pipiens CpipJ_CPIJ010152 N
csin104729 Clonorchis sinensis csin104729 N
D915_06741 Fasciola hepatica D915_06741 N
DAPPUDRAFT_327651 Daphnia pulex DAPPUDRAFT_327651 N
DME_0001005001 Dracunculus medinensis DME_0001005001 N
ECANG7_06547 Echinococcus canadensis ECANG7_06547 I
EmuJ_001157200 Echinococcus multilocularis EmuJ_001157200 I
ENSCHOG00000011802 Choloepus hoffmanni ENSCHOG00000011802 N
estExt_fgenesh2_pg.C_Chr_060255 Micromonas sp RCC299 estExt_fgenesh2_pg.C_Chr_060255 N
EuGene.0000090416 Micromonas pusilla EuGene.0000090416 N
EVEC_0000024601 Enterobius vermicularis EVEC_0000024601 N
fgenesh1_pg.1__154 Bigelowiella natans fgenesh1_pg.1__154 N
GA26236 Drosophila pseudoobscura FBgn0247610 N
GB44899 Apis mellifera GB44899 N
GF23141 Drosophila ananassae FBgn0100135 N
Gfo_R011571 Geospiza fortis Gfo_R011571 N
GG16758 Drosophila erecta FBgn0108988 N
GH15872 Drosophila grimshawi FBgn0123343 N
GI23637 Drosophila mojavensis FBgn0146363 N
GJ24712 Drosophila virilis FBgn0211788 N
GK22507 Drosophila willistoni FBgn0224484 N
GL50803_17540 Giardia lamblia GL50803_17540 I
GM15347 Drosophila sechellia FBgn0170267 N
GPLIN_000967000 Globodera pallida GPLIN_000967000 I
HDID_0000342501 Hymenolepis diminuta HDID_0000342501 I
HHAL005964-PA Halyomorpha halys HHAL005964-PA N
HMEL002206 Heliconius melpomene HMEL002206 N
HmN_000451100 Hymenolepis microstoma HmN_000451100 I
HNAJ_0000082601 Hymenolepis nana HNAJ_0000082601 I
Hsal_01939--XP_395512.3_APIME Harpegnathos saltator Hsal_01939--XP_395512.3_APIME N
ISCW014189 Ixodes scapularis ISCW014189 I
KGM_12579 Danaus plexippus KGM_12579 N
LCUP015823 Lucilia cuprina LCUP015823 N
LDEC011073 Leptinotarsa decemlineata LDEC011073 I
LLOJ000864 Lutzomyia longipalpis LLOJ000864 N
LotgiG131492 Lottia gigantea LotgiG131492 I
MCOS_0000539101 Mesocestoides corti MCOS_0000539101 I
MDOA004559 Musca domestica MDOA004559 N
ML16136a Mnemiopsis leidyi ML16136a N
NV21537 Nasonia vitripennis NV21537 N
Ocbimv22032810m.g Octopus bimaculoides Ocbimv22032810m.g I
osa Drosophila melanogaster FBgn0261885 N
osa Drosophila yakuba FBgn0041640 N
PHUM080380 Pediculus humanus PHUM080380 N
PPAI002183 Phlebotomus papatasi PPAI002183 N
PXEA_0000852601 Protopolystoma xenopodis PXEA_0000852601 N
RPRC005301 Rhodnius prolixus RPRC005301 N
Sakowv30017861m.g Saccoglossus kowalevskii Sakowv30017861m.g I
SBAD_0000668001 Soboliphyme baturini SBAD_0000668001 N
SCUD_0001703701 Schistosoma curassoni SCUD_0001703701 N
SINV22763 Solenopsis invicta SINV22763 N
Sjc_0060650 Schistosoma japonicum Sjc_0060650 N
SMAR003184 Strigamia maritima SMAR003184 I
SMAR006121 Strigamia maritima SMAR006121 I
Smp_156170 Schistosoma mansoni Smp_156170 N
SMTD_0000055001 Schistosoma mattheei SMTD_0000055001 N
SMU15017366 Schmidtea mediterranea SMU15017366 N
SMU15033702 Schmidtea mediterranea SMU15033702 N
SPU_023530 Strongylocentrotus purpuratus SPU_023530 I
SSLN_0000405401 Schistocephalus solidus SSLN_0000405401 I
T265_07301 Opisthorchis viverrini T265_07301 N
TC013586 Tribolium castaneum TC013586 N
tetur02g14160 Tetranychus urticae tetur02g14160 N
tetur02g14180 Tetranychus urticae tetur02g14180 N
TsM_000529300 Taenia solium TsM_000529300 I
TTAC_0000915101 Hydatigera taeniaeformis TTAC_0000915101 I
XP_002934686 Xenopus tropicalis XP_002934686 N
YQE_09239 Dendroctonus ponderosae YQE_09239 N