CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

GH19480 *(Drosophila grimshawi)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	FBgn0126945	T217801_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
bcd M03779_2.00	Drosophila melanogaster	NNNTAATCCNN	NNGGATTANNN	SELEX Nitta et al.(2015) bcd_1	0.867	1.000
bcd M05872_2.00	Drosophila melanogaster	HTAATCY	RGATTAD	SMiLE-seq Isakova et al.(2017) Bcd	0.867	1.000
bcd M06480_2.00	Drosophila melanogaster	TAATCC	GGATTA	B1H Mathelier et al.(2014) MA0212.1	0.867	1.000
bcd M06219_2.00	Drosophila melanogaster	BNTAATCC	GGATTANV	B1H Zhu et al.(2011) Bcd_Cell_FBgn0000166	0.867	1.000
bcd M06220_2.00	Drosophila melanogaster	HTAAKCYB	VRGMTTAD	B1H Zhu et al.(2011) bcd_FlyReg_FBgn0000166	0.867	1.000
bcd M06221_2.00	Drosophila melanogaster	YWAAKCY	RGMTTWR	B1H Zhu et al.(2011) bcd_NAR_FBgn0000166	0.867	1.000
bcd M06222_2.00	Drosophila melanogaster	BTAATCY	RGATTAV	B1H Zhu et al.(2011) Bcd_SOLEXA_FBgn0000166	0.867	1.000
bcd M09673_2.00	Drosophila melanogaster	YTAAKCY	RGMTTAR	Misc Kulakovskiy et al.(2009) bcd	0.867	1.000
bcd M10782_2.00	Drosophila melanogaster	HTAATCYS	SRGATTAD	Transfac Matys et al.(2006) I$BCD_01	0.867	1.000
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
FBpp0153386	Homeodomain	87	143	RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKI

Links
Other Homeodomain family TFs
Other *Drosophila grimshawi* TFs

13 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
L596_g1056	Steinernema carpocapsae	L596_g1056	N
L889_g5312	Steinernema feltiae	L889_g5312	N
L892_g27545	Steinernema scapterisci	L892_g27545	N
L893_g33788	Steinernema glaseri	L893_g33788	N
L898_g16521	Steinernema monticolum	L898_g16521	N
PTRK_0000042600	Parastrongyloides trichosuri	PTRK_0000042600	N
RSKR_0000405100	Rhabditophanes kr3021	RSKR_0000405100	N
SPAL_0000254800	Strongyloides papillosus	SPAL_0000254800	N
SSTP_0000526000	Strongyloides stercoralis	SSTP_0000526000	N
SVE_0255600	Strongyloides venezuelensis	SVE_0255600	N