MESCA006295 (Megaselia scalaris)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 MESCA006295 T220560_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Lim3
M02116_2.00 		Drosophila melanogaster
NNNNNATBRN
NYVATNNNNN		 PBM
Weirauch et al.(2014)
pTH6478 		0.685 0.926
Lim3
M03796_2.00 		Drosophila melanogaster
BTAATTAV
BTAATTAV		 SELEX
Nitta et al.(2015)
Lim3_1 		0.685 0.926
Lim3
M06492_2.00 		Drosophila melanogaster
HTAATKA
TMATTAD		 B1H
Mathelier et al.(2014)
MA0195.1 		0.685 0.926
Lim3
M06258_2.00 		Drosophila melanogaster
HHTAATKA
TMATTADD		 B1H
Zhu et al.(2011)
Lim3_Cell_FBgn0002023 		0.685 0.926
Lim3
M06259_2.00 		Drosophila melanogaster
HTRATTR
YAATYAD		 B1H
Zhu et al.(2011)
Lim3_SOLEXA_FBgn0002023 		0.685 0.926
Lhx4
M00430_2.00 		Mus musculus
NYAATHN
NDATTRN		 PBM
Berger et al.(2008)
Lhx4_1719 		0.673 0.889
Lhx4
M03257_2.00 		Mus musculus
BTAATTRN
NYAATTAV		 SELEX
Jolma et al.(2013)
Lhx4_1 		0.673 0.889
LHX4
M05063_2.00 		Homo sapiens
BYAATYRV
BYRATTRV		 SELEX
Yin et al.(2017)
LHX4_eDBD_HT-SELEX 		0.673 0.889
LHX4
M05066_2.00 		Homo sapiens
BTAATTAN
NTAATTAV		 SELEX
Yin et al.(2017)
LHX4_FL_HT-SELEX 		0.673 0.889
LHX4
M05064_2.00 		Homo sapiens
BYAATTRV
BYAATTRV		 SELEX
Yin et al.(2017)
LHX4_eDBD_Methyl-HT-SELEX_1 		0.673 0.889
LHX4
M05065_2.00 		Homo sapiens
NTWAYGHN
NDCRTWAN		 SELEX
Yin et al.(2017)
LHX4_eDBD_Methyl-HT-SELEX_2 		0.673 0.889
LHX4
M05067_2.00 		Homo sapiens
NYAATTRN
NYAATTRN		 SELEX
Yin et al.(2017)
LHX4_FL_Methyl-HT-SELEX_1 		0.673 0.889
LHX4
M05068_2.00 		Homo sapiens
NTAAYGHN
NDCRTTAN		 SELEX
Yin et al.(2017)
LHX4_FL_Methyl-HT-SELEX_2 		0.673 0.889
Lhx3
M00435_2.00 		Mus musculus
NNNYAATHW
WDATTRNNN		 PBM
Berger et al.(2008)
Lhx3_3431 		0.669 0.889
Lhx3
M02687_2.00 		Mus musculus
VRWTAATTAATTW
WAATTAATTAWYB		 SELEX
Mathelier et al.(2014)
MA0135.1 		0.669 0.889
LHX3
M09137_2.00 		Homo sapiens
NYTAATTAAWTHH
DDAWTTAATTARN		 Misc
Kulakovskiy et al.(2013)
LHX3_HUMAN.H11MO.0.C 		0.669 0.889
Lhx3
M09188_2.00 		Mus musculus
NYTRATKRV
BYMATYARN		 Misc
Kulakovskiy et al.(2013)
LHX3_MOUSE.H11MO.0.C 		0.669 0.889
Lhx3
M09570_2.00 		Mus musculus
NNBTAATTAV
BTAATTAVNN		 Misc
Heinz et al.(2010)
Neuron-Lhx3_GSE31456 		0.669 0.889
LHX3
M10657_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LHX3A_01 		0.669 0.889
LHX3
M10658_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LHX3b_01 		0.669 0.889
LHX3
M10659_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LHX3_Q3 		0.669 0.889
ZFHX2
M02089_2.00 		Homo sapiens
NNTRATYANN
NNTRATYANN		 PBM
Weirauch et al.(2014)
pTH5642 		0.663 0.500
lim-4
M02182_2.00 		Caenorhabditis elegans
YTAATTRVN
NBYAATTAR		 PBM
Weirauch et al.(2014)
pTH6366 		0.649 0.481
Awh
M02121_2.00 		Drosophila melanogaster
NNTAATTANN
NNTAATTANN		 PBM
Weirauch et al.(2014)
pTH5759 		0.648 0.463
Awh
M03831_2.00 		Drosophila melanogaster
BTAATTRV
BYAATTAV		 SELEX
Nitta et al.(2015)
Awh_1 		0.648 0.463
Awh
M06513_2.00 		Drosophila melanogaster
YTAATTA
TAATTAR		 B1H
Mathelier et al.(2014)
MA0167.1 		0.648 0.463
Awh
M06303_2.00 		Drosophila melanogaster
YTAATTA
TAATTAR		 B1H
Zhu et al.(2011)
Awh_Cell_FBgn0013751 		0.648 0.463
Awh
M06304_2.00 		Drosophila melanogaster
YTAATKR
YMATTAR		 B1H
Zhu et al.(2011)
Awh_SOLEXA_FBgn0013751 		0.648 0.463
LHX6
M02086_2.00 		Homo sapiens
NTRATTRN
NYAATYAN		 PBM
Weirauch et al.(2014)
pTH6556 		0.644 0.426
Lhx6
M00434_2.00 		Mus musculus
NTRATTRN
NYAATYAN		 PBM
Berger et al.(2008)
Lhx6_2272 		0.644 0.426
Lhx8
M00534_2.00 		Mus musculus
NNTRATKRN
NYMATYANN		 PBM
Berger et al.(2008)
Lhx8_2247 		0.644 0.426
Lhx6_CONSTRUCT
M00539_2.00 		PBM CONSTRUCTS
NNTRATTRN
NYAATYANN		 PBM
Berger et al.(2008)
Lhx6_3432 		0.644 0.426
LHX6
M03108_2.00 		Homo sapiens
VYTAATTAVB
VBTAATTARB		 SELEX
Jolma et al.(2013)
LHX6_1 		0.644 0.426
LHX6
M03109_2.00 		Homo sapiens
YAATYARYRCTAATTA
TAATTAGYRYTRATTR		 SELEX
Jolma et al.(2013)
LHX6_2 		0.644 0.426
LHX6
M03110_2.00 		Homo sapiens
TRATTGCAATYA
TRATTGCAATYA		 SELEX
Jolma et al.(2013)
LHX6_3 		0.644 0.426
Lhx8
M03288_2.00 		Mus musculus
BYRATYRVNNBTRATYRN
NYRATYAVNNBYRATYRV		 SELEX
Jolma et al.(2013)
Lhx8_1 		0.644 0.426
Lhx8
M03289_2.00 		Mus musculus
BYRATYRV
BYRATYRV		 SELEX
Jolma et al.(2013)
Lhx8_2 		0.644 0.426
Lhx8
M03290_2.00 		Mus musculus
TRATTGCAATYA
TRATTGCAATYA		 SELEX
Jolma et al.(2013)
Lhx8_3 		0.644 0.426
LHX6
M04992_2.00 		Homo sapiens
CTAATTRV
BYAATTAG		 SELEX
Yin et al.(2017)
LHX6_FL_HT-SELEX_1 		0.644 0.426
LHX6
M04993_2.00 		Homo sapiens
TRATTGCAATYA
TRATTGCAATYA		 SELEX
Yin et al.(2017)
LHX6_FL_HT-SELEX_2 		0.644 0.426
LHX8
M05210_2.00 		Homo sapiens
STAATTAN
NTAATTAS		 SELEX
Yin et al.(2017)
LHX8_FL_HT-SELEX_1 		0.644 0.426
LHX8
M05211_2.00 		Homo sapiens
TRATTGCAATYA
TRATTGCAATYA		 SELEX
Yin et al.(2017)
LHX8_FL_HT-SELEX_2 		0.644 0.426
LHX6
M05870_2.00 		Homo sapiens
NYTRATTR
YAATYARN		 SMiLE-seq
Isakova et al.(2017)
LHX6 		0.644 0.426
Lhx6
M09187_2.00 		Mus musculus
NYTGATTRV
BYAATCARN		 Misc
Kulakovskiy et al.(2013)
LHX6_MOUSE.H11MO.0.C 		0.644 0.426
LHX8
M10713_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LHX8_06 		0.644 0.426
LHX6
M04994_2.00 		Homo sapiens
STAATTAV
BTAATTAS		 SELEX
Yin et al.(2017)
LHX6_FL_Methyl-HT-SELEX_1 		0.644 0.426
LHX6
M04995_2.00 		Homo sapiens
HTAACGAG
CTCGTTAD		 SELEX
Yin et al.(2017)
LHX6_FL_Methyl-HT-SELEX_2 		0.644 0.426
LHX6
M04996_2.00 		Homo sapiens
TRATTGCAATYA
TRATTGCAATYA		 SELEX
Yin et al.(2017)
LHX6_FL_Methyl-HT-SELEX_3 		0.644 0.426
LHX8
M05212_2.00 		Homo sapiens
STAATYAN
NTRATTAS		 SELEX
Yin et al.(2017)
LHX8_FL_Methyl-HT-SELEX_1 		0.644 0.426
LHX8
M05213_2.00 		Homo sapiens
NTAACGAB
VTCGTTAN		 SELEX
Yin et al.(2017)
LHX8_FL_Methyl-HT-SELEX_2 		0.644 0.426
LHX8
M05214_2.00 		Homo sapiens
TRATTGCAATYA
TRATTGCAATYA		 SELEX
Yin et al.(2017)
LHX8_FL_Methyl-HT-SELEX_3 		0.644 0.426
ceh-5
M02179_2.00 		Caenorhabditis elegans
NNTAATDDN
NHHATTANN		 PBM
Weirauch et al.(2014)
pTH6562 		0.638 0.444
VAX2
M00284_2.00 		Homo sapiens
NNTAATND
HNATTANN		 PBM
Barrera et al.(2016)
VAX2_REF 		0.629 0.370
Vax1
M00398_2.00 		Mus musculus
NTAATNDNN
NNHNATTAN		 PBM
Berger et al.(2008)
Vax1_3499 		0.629 0.370
Vax2
M00464_2.00 		Mus musculus
NTAATDDNN
NNHHATTAN		 PBM
Berger et al.(2008)
Vax2_3500 		0.629 0.370
VAX2
M03119_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX2_1 		0.629 0.370
VAX2
M05030_2.00 		Homo sapiens
BTAATTRV
BYAATTAV		 SELEX
Yin et al.(2017)
VAX2_FL_HT-SELEX 		0.629 0.370
Vax1
M10764_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VAX1_04 		0.629 0.370
VAX2
M00283_2.00 		Homo sapiens
NNTAAWNDNN
NNHNWTTANN		 PBM
Barrera et al.(2016)
VAX2_L139M 		0.629 0.370
VAX2
M05031_2.00 		Homo sapiens
BTAATTRV
BYAATTAV		 SELEX
Yin et al.(2017)
VAX2_FL_Methyl-HT-SELEX 		0.629 0.370
C4B866_NEMVE
M02052_2.00 		Nematostella vectensis
NNTTAATTARNN
NNYTAATTAANN		 PBM
Weirauch et al.(2014)
pTH6176 		0.626 0.574
EMX1
M02088_2.00 		Homo sapiens
NNTAATKANN
NNTMATTANN		 PBM
Weirauch et al.(2014)
pTH5677 		0.626 0.370
Emx2
M00495_2.00 		Mus musculus
NTAATDDNN
NNHHATTAN		 PBM
Berger et al.(2008)
Emx2_3420 		0.626 0.370
EMX1
M03151_2.00 		Homo sapiens
NBTAATTRNN
NNYAATTAVN		 SELEX
Jolma et al.(2013)
EMX1_1 		0.626 0.370
EMX1
M03152_2.00 		Homo sapiens
YMATTARYTAATKR
YMATTARYTAATKR		 SELEX
Jolma et al.(2013)
EMX1_2 		0.626 0.370
EMX2
M03210_2.00 		Homo sapiens
NBTAATTANN
NNTAATTAVN		 SELEX
Jolma et al.(2013)
EMX2_1 		0.626 0.370
EMX2
M03211_2.00 		Homo sapiens
YMATTARBTAATKR
YMATTAVYTAATKR		 SELEX
Jolma et al.(2013)
EMX2_2 		0.626 0.370
E5
M03814_2.00 		Drosophila melanogaster
STAATKNN
NNMATTAS		 SELEX
Nitta et al.(2015)
E5_1 		0.626 0.370
EMX1
M05145_2.00 		Homo sapiens
BTAATTAN
NTAATTAV		 SELEX
Yin et al.(2017)
EMX1_eDBD_HT-SELEX 		0.626 0.370
EMX1
M05147_2.00 		Homo sapiens
BTAATTAV
BTAATTAV		 SELEX
Yin et al.(2017)
EMX1_FL_HT-SELEX 		0.626 0.370
EMX2
M05281_2.00 		Homo sapiens
YTAATKAB
VTMATTAR		 SELEX
Yin et al.(2017)
EMX2_eDBD_HT-SELEX 		0.626 0.370
E5
M06507_2.00 		Drosophila melanogaster
BTAATKA
TMATTAV		 B1H
Mathelier et al.(2014)
MA0189.1 		0.626 0.370
E5
M06293_2.00 		Drosophila melanogaster
NBTAATKA
TMATTAVN		 B1H
Zhu et al.(2011)
E5_Cell_FBgn0008646 		0.626 0.370
E5
M06294_2.00 		Drosophila melanogaster
NTAATDR
YHATTAN		 B1H
Zhu et al.(2011)
E5_SOLEXA_FBgn0008646 		0.626 0.370
EMX1
M05146_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
EMX1_eDBD_Methyl-HT-SELEX 		0.626 0.370
EMX1
M05148_2.00 		Homo sapiens
BTAATTAN
NTAATTAV		 SELEX
Yin et al.(2017)
EMX1_FL_Methyl-HT-SELEX 		0.626 0.370
EMX2
M05282_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Yin et al.(2017)
EMX2_eDBD_Methyl-HT-SELEX 		0.626 0.370
ems
M02114_2.00 		Drosophila melanogaster
NTAATKRNB
VNYMATTAN		 PBM
Weirauch et al.(2014)
pTH5673 		0.626 0.352
ems
M03789_2.00 		Drosophila melanogaster
BTAATTAN
NTAATTAV		 SELEX
Nitta et al.(2015)
ems_1 		0.626 0.352
ems
M03790_2.00 		Drosophila melanogaster
BTAATTAVBVBTAATKRN
NYMATTAVBVBTAATTAV		 SELEX
Nitta et al.(2015)
ems_2 		0.626 0.352
ems
M03791_2.00 		Drosophila melanogaster
BTAATKRN
NYMATTAV		 SELEX
Nitta et al.(2015)
ems_3 		0.626 0.352
ems
M03792_2.00 		Drosophila melanogaster
STAATKRSSSSTAATKRV
BYMATTASSSSYMATTAS		 SELEX
Nitta et al.(2015)
ems_4 		0.626 0.352
ems
M06484_2.00 		Drosophila melanogaster
HTAATKR
YMATTAD		 B1H
Mathelier et al.(2014)
MA0219.1 		0.626 0.352
ems
M06233_2.00 		Drosophila melanogaster
WHTAATKR
YMATTADW		 B1H
Zhu et al.(2011)
Ems_Cell_FBgn0000576 		0.626 0.352
ems
M06234_2.00 		Drosophila melanogaster
TSTMATHM
KDATKASA		 B1H
Zhu et al.(2011)
ems_FlyReg_FBgn0000576 		0.626 0.352
ems
M06235_2.00 		Drosophila melanogaster
YTAATKA
TMATTAR		 B1H
Zhu et al.(2011)
Ems_SOLEXA_FBgn0000576 		0.626 0.352
ems
M09676_2.00 		Drosophila melanogaster
WTWATGA
TCATWAW		 Misc
Kulakovskiy et al.(2009)
ems 		0.626 0.352
ESX1
M00291_2.00 		Homo sapiens
NNTRATNRN
NYNATYANN		 PBM
Barrera et al.(2016)
ESX1_K193R 		0.624 0.426
Q4RRY4_TETNG
M02169_2.00 		Tetraodon nigroviridis
NNYAATYAN
NTRATTRNN		 PBM
Weirauch et al.(2014)
pTH6326 		0.621 0.426
Otp
M00417_2.00 		Mus musculus
NNHAATND
HNATTDNN		 PBM
Berger et al.(2008)
Otp_3496 		0.601 0.426
ap
M06478_2.00 		Drosophila melanogaster
YTAATKA
TMATTAR		 B1H
Mathelier et al.(2014)
MA0209.1 		0.601 0.463
ap
M06214_2.00 		Drosophila melanogaster
VYTAATKA
TMATTARB		 B1H
Zhu et al.(2011)
Ap_Cell_FBgn0000099 		0.601 0.463
ap
M06215_2.00 		Drosophila melanogaster
BAATHA
TDATTV		 B1H
Zhu et al.(2011)
ap_FlyReg_FBgn0000099 		0.601 0.463
ap
M06216_2.00 		Drosophila melanogaster
HTAATKR
YMATTAD		 B1H
Zhu et al.(2011)
Ap_SOLEXA_FBgn0000099 		0.601 0.463
ap
M10781_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$AP_Q6 		0.601 0.463
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MESCA006295-PA Homeodomain 130 183

Links

Other Homeodomain family TFs
Other Megaselia scalaris TFs

1223 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_073460 Acremonium chrysogenum ACRE_073460 I
AUEXF2481DRAFT_273261 Aureobasidium subglaciale AUEXF2481DRAFT_273261 I
BAUCODRAFT_29233 Baudoinia compniacensis BAUCODRAFT_29233 I
BBA_01180 Beauveria bassiana BBA_01180 I
Bcin11g02190 Botrytis cinerea Bcin11g02190 I
BGHDH14_bgh05591 Blumeria graminis BGHDH14_bgh05591 I
CFIO01_10925 Colletotrichum fioriniae CFIO01_10925 I
CGGC5_1994 Colletotrichum gloeosporioides CGGC5_1994 I
CH063_15703 Colletotrichum higginsianum CH063_15703 I
CHGG_00810 Chaetomium globosum CHGG_00810 I
CMQ_8059 Grosmannia clavigera CMQ_8059 I
Cob_01690 Colletotrichum orbiculare Cob_01690 I
COCSADRAFT_233623 Bipolaris sorokiniana COCSADRAFT_233623 I
CPUR_08856 Claviceps purpurea CPUR_08856 I
CSUB01_02350 Colletotrichum sublineola CSUB01_02350 I
CTHT_0059940 Chaetomium thermophilum CTHT_0059940 I
DOTSEDRAFT_68446 Dothistroma septosporum DOTSEDRAFT_68446 I
estExt_fgenesh1_pg.C_10183 Mycosphaerella fijiensis estExt_fgenesh1_pg.C_10183 I
estExt_fgenesh2_pg.C_70450 Neurospora discreta estExt_fgenesh2_pg.C_70450 I
EV44_g4453 Erysiphe necator EV44_g4453 I
F503_02324 Ophiostoma piceae uamh F503_02324 I
FFUJ_02750 Fusarium fujikuroi FFUJ_02750 I
fgenesh1_pm.sca_3_chr4_2_0000293 Nectria haematococca fgenesh1_pm.sca_3_chr4_2_0000293 I
FGRRES_16777 Fusarium graminearum FGRRES_16777 I
FOXG_01706 Fusarium oxysporum FOXG_01706 I
FPSE_02684 Fusarium pseudograminearum FPSE_02684 I
FVEG_08072 Fusarium verticillioides FVEG_08072 I
GGTG_10172 Gaeumannomyces graminis GGTG_10172 I
GLRG_03912 Colletotrichum graminicola GLRG_03912 I
GMDG_04263 Pseudogymnoascus destructans GMDG_04263 I
HMPREF1624_05238 Sporothrix schenckii HMPREF1624_05238 I
LEMA_P054670.1 Leptosphaeria maculans LEMA_P054670.1 I
M437DRAFT_64191 Aureobasidium melanogenum M437DRAFT_64191 I
M438DRAFT_355299 Aureobasidium pullulans M438DRAFT_355299 I
MAC_06175 Metarhizium acridum MAC_06175 I
MAJ_00965 Metarhizium majus MAJ_00965 I
MAM_05700 Metarhizium album MAM_05700 I
MANI_001888 Metarhizium anisopliae MANI_001888 I
MAPG_03141 Magnaporthe poae MAPG_03141 I
MBM_05757 Marssonina brunnea MBM_05757 I
MBR_03139 Metarhizium brunneum MBR_03139 I
MGG_00184 Magnaporthe oryzae MGG_00184 I
MGU_03055 Metarhizium guizhouense MGU_03055 I
MPH_03255 Macrophomina phaseolina MPH_03255 I
MYCTH_2296328 Myceliophthora thermophila MYCTH_2296328 I
NCU03070 Neurospora crassa NCU03070 D
NechaG92678 Fusarium solani NechaG92678 I
NEUTE1DRAFT_91411 Neurospora tetrasperma NEUTE1DRAFT_91411 I
OCS_05859 Ophiocordyceps sinensis OCS_05859 I
OIDMADRAFT_196475 Oidiodendron maius OIDMADRAFT_196475 I
PFICI_01477 Pestalotiopsis fici PFICI_01477 I
PODANS_1_12070 Podospora anserina PODANS_1_12070 I
PV09_02505 Verruconis gallopava PV09_02505 I
S40285_05687 Stachybotrys chlorohalonata S40285_05687 I
S40288_04931 Stachybotrys chartarum S40288_04931 I
SAPIO_CDS3676 Scedosporium apiospermum SAPIO_CDS3676 I
SBOR_9020 Sclerotinia borealis SBOR_9020 I
SETTUDRAFT_122108 Setosphaeria turcica SETTUDRAFT_122108 I
SMAC_02800 Sordaria macrospora SMAC_02800 I
SPBR_04777 Sporothrix brasiliensis SPBR_04777 I
SS1G_01567 Sclerotinia sclerotiorum SS1G_01567 I
THITE_2113433 Thielavia terrestris THITE_2113433 I
TRIATDRAFT_164928 Trichoderma atroviride TRIATDRAFT_164928 I
TRIREDRAFT_121074 Trichoderma reesei TRIREDRAFT_121074 I
UCRNP2_1205 Neofusicoccum parvum UCRNP2_1205 I
UV8b_4370 Ustilaginoidea virens UV8b_4370 I
V499_07400 Pseudogymnoascus pannorum V499_07400 I
VDAG_08786 Verticillium dahliae VDAG_08786 I
VHEMI10600 Torrubiella hemipterigena VHEMI10600 I
W97_00691 Coniosporium apollinis W97_00691 I
X797_004249 Metarhizium robertsii X797_004249 I