ORGLA01G0311100 (Oryza glaberrima)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ORGLA01G0311100 T221808_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.827 0.717
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.626 0.587
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.618 0.457
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.618 0.457
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.618 0.457
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.618 0.457
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORGLA01G0311100.1 Homeodomain 382 430

Links

Other Homeodomain family TFs
Other Oryza glaberrima TFs

1012 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo2g100340 Brassica oleracea Bo2g100340 N
Bostr.16335s0035 Boechera stricta Bostr.16335s0035 N
cassava26969.m1 Manihot esculenta cassava26969.m1 N
Ciclev10019662m.g Citrus clementina Ciclev10019662m.g N
Cla015352 Citrullus lanatus Cla015352 N
GLYMA03G37521 Glycine max GLYMA03G37521 N
GLYMA19G40141 Glycine max GLYMA19G40141 N
Lus10013421.g Linum usitatissimum Lus10013421.g N
orange1.1g009421m.g Citrus sinensis orange1.1g009421m.g N
TCM_004738 Theobroma cacao TCM_004738 N
VIT_07s0005g00970 Vitis vinifera VIT_07s0005g00970 N