ORGLA03G0089600 (Oryza glaberrima)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ORGLA03G0089600 T221826_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HAT22
M06926_2.00 		Arabidopsis thaliana
NNYAATCATT
AATGATTRNN		 Dap-seq
OMalley et al.(2016)
HAT22_col_a 		0.830 0.877
HAT2
M06929_2.00 		Arabidopsis thaliana
NHAATGATTRN
NYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT2_colamp_a 		0.797 0.789
HAT2
M06930_2.00 		Arabidopsis thaliana
WNYAATCATWD
HWATGATTRNW		 Dap-seq
OMalley et al.(2016)
HAT2_col_v31 		0.797 0.789
HAT1
M02047_2.00 		Arabidopsis thaliana
NMATGATTRN
NYAATCATKN		 PBM
Weirauch et al.(2014)
pTH8107 		0.795 0.789
HAT1
M06922_2.00 		Arabidopsis thaliana
NHAATGATTRNNWDW
WHWNNYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT1_col_a 		0.795 0.789
HAT1
M06923_2.00 		Arabidopsis thaliana
NYAATCATTDN
NHAATGATTRN		 Dap-seq
OMalley et al.(2016)
HAT1_colamp_a 		0.795 0.789
ATHB-X
M06902_2.00 		Arabidopsis thaliana
HHAATRATTRN
NYAATYATTDD		 Dap-seq
OMalley et al.(2016)
ATHB18_col_a 		0.773 0.702
ATHB-X
M06903_2.00 		Arabidopsis thaliana
NYAATGATTRV
BYAATCATTRN		 Dap-seq
OMalley et al.(2016)
ATHB18_colamp_a 		0.773 0.702
HAT3
M00728_2.00 		Arabidopsis thaliana
DTGATTRV
BYAATCAH		 PBM
Chang et al.(2013)
pTH7400 		0.767 0.825
ATHB-4
M01065_2.00 		Arabidopsis thaliana
NBMTGCATRNN
NNYATGCAKVN		 PBM
Sullivan et al.(2014)
pTH8184 		0.767 0.807
ATHB-4
M02042_2.00 		Arabidopsis thaliana
NNWTNATTRN
NYAATNAWNN		 PBM
Weirauch et al.(2014)
pTH8667 		0.767 0.807
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORGLA03G0089600.1 Homeodomain 125 181

Links

Other Homeodomain family TFs
Other Oryza glaberrima TFs

694 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACEP15315 Atta cephalotes ACEP15315 N 0.000
ADIR004612 Anopheles dirus ADIR004612 N 0.000
AEPI000661 Anopheles epiroticus AEPI000661 N 0.000
ANCDUO_20974 Ancylostoma duodenale ANCDUO_20974 N 0.000
ASIS006297 Anopheles sinensis ASIS006297 N 0.000
CRE03357 Caenorhabditis remanei CRE03357 N 0.000
DILT_0001312701 Diphyllobothrium latum DILT_0001312701 N 0.000
ECPE_0000273401 Echinostoma caproni ECPE_0000273401 N 0.000
fgenesh1_kg.C_scaffold_16000108 Phytophthora capsici fgenesh1_kg.C_scaffold_16000108 N 0.000
LOAG_09072 Loa loa LOAG_09072 N 0.000
MDOA004921 Musca domestica MDOA004921 N 0.000
nOo.2.0.1.g06577 Onchocerca ochengi nOo.2.0.1.g06577 N 0.000
pax6.L Xenopus laevis XB-GENE-865046 I 0.000
PEQ_0000587201 Parascaris equorum PEQ_0000587201 N 0.000
PXEA_0001865101 Protopolystoma xenopodis PXEA_0001865101 N 0.000
PXEA_0002437401 Protopolystoma xenopodis PXEA_0002437401 N 0.000
Sjc_0082940 Schistosoma japonicum Sjc_0082940 N 0.000
SMU15026520 Schmidtea mediterranea SMU15026520 N 0.000
SPER_0000032601 Spirometra erinaceieuropaei SPER_0000032601 N 0.000
SPER_0003607601 Spirometra erinaceieuropaei SPER_0003607601 N 0.000
SSLN_0001114201 Schistocephalus solidus SSLN_0001114201 N 0.000