ORUFI12G22300 (Oryza rufipogon)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ORUFI12G22300 T221973_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.842 0.735
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.626 0.551
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.602 0.408
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.602 0.408
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.602 0.408
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.602 0.408
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORUFI12G22300.1 Homeodomain 396 447

Links

Other Homeodomain family TFs
Other Oryza rufipogon TFs

1011 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
e_gw1.4.390.1 Phytophthora capsici e_gw1.4.390.1 I 0.000
F443_04247 Phytophthora parasitica F443_04247 I 0.000
F443_20633 Phytophthora parasitica F443_20633 I 0.000
fgenesh_scip_prom.28083.3668 Phytophthora lateralis fgenesh_scip_prom.28083.3668 I 0.000
fgenesh_scip_prom.28083.4862 Phytophthora lateralis fgenesh_scip_prom.28083.4862 N 0.000
fgenesh_scip_prom.46568.10732 Phytophthora kernoviae fgenesh_scip_prom.46568.10732 I 0.000
fgenesh_scip_prom.46568.5993 Phytophthora kernoviae fgenesh_scip_prom.46568.5993 I 0.000
HpaG801016 Hyaloperonospora arabidopsidis HpaG801016 I 0.000
HpaG811872 Hyaloperonospora arabidopsidis HpaG811872 I 0.000
maker-par_contig_5774-fgenesh-gene-0.0 Pythium arrhenomanes maker-par_contig_5774-fgenesh-gene-0.0 I 0.000
maker-pir_contig_1153-fgenesh-gene-0.2 Pythium irregulare maker-pir_contig_1153-fgenesh-gene-0.2 I 0.000
maker-pir_contig_1401-snap-gene-0.1 Pythium irregulare maker-pir_contig_1401-snap-gene-0.1 I 0.000
maker-pir_contig_210-snap-gene-0.17 Pythium irregulare maker-pir_contig_210-snap-gene-0.17 N 0.000
maker-piw_contig_2979-fgenesh-gene-0.0 Pythium iwayamai maker-piw_contig_2979-fgenesh-gene-0.0 I 0.000
maker-piw_contig_3553-fgenesh-gene-0.0 Pythium iwayamai maker-piw_contig_3553-fgenesh-gene-0.0 N 0.000
maker-pve_contig_182-snap-gene-0.15 Pythium vexans maker-pve_contig_182-snap-gene-0.15 I 0.000
maker-pve_contig_695-fgenesh-gene-0.3 Pythium vexans maker-pve_contig_695-fgenesh-gene-0.3 I 0.000
Phyra72796 Phytophthora ramorum Phyra72796 D 0.000
Phyra80899 Phytophthora ramorum Phyra80899 N 0.000
Physo132994 Phytophthora sojae Physo132994 I 0.000
Physo142552 Phytophthora sojae Physo142552 I 0.000
PITG_00513 Phytophthora infestans PITG_00513 I 0.000
PITG_14364 Phytophthora infestans PITG_14364 I 0.000
PYU1_G004134 Pythium ultimum PYU1_G004134 I 0.000
SPRG_06723 Saprolegnia parasitica SPRG_06723 N 0.000