CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0006s24680
(
Populus trichocarpa
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
POPTR_0006s24680
T222518_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ATH1
M10627_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ATH1_01
0.855
0.898
Q5EVH4_OIKDI
M02227_2.00
Oikopleura dioica
NTGACAKN
NMTGTCAN
PBM
Weirauch et al.(2014)
pTH6041
0.604
0.510
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0006s24680.1
Homeodomain
472
523
ERSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWK
Links
Other
Homeodomain
family TFs
Other
Populus trichocarpa
TFs
953 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ASIS002444
Anopheles sinensis
ASIS002444
N
0.000
CLEC004367
Cimex lectularius
CLEC004367
N
0.000
Cmyd_10007727
Chelonia mydas
Cmyd_10007727
N
0.000
CRE28162
Caenorhabditis remanei
CRE28162
N
0.000
GH16346
Drosophila grimshawi
FBgn0123817
N
0.000
LCUP017801
Lucilia cuprina
LCUP017801
N
0.000