POPTR_0017s04760 (Populus trichocarpa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 POPTR_0017s04760 T222579_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00 		Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432 		0.668 0.737
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0017s04760.1 Homeodomain 28 84

Links

Other Homeodomain family TFs
Other Populus trichocarpa TFs

131 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29739.m003597 Ricinus communis 29739.m003597 N
Bostr.10273s0444 Boechera stricta Bostr.10273s0444 N
Bra008646 Brassica rapa Bra008646 N
Cagra.1995s0004 Capsella grandiflora Cagra.1995s0004 N
Carubv10027922m.g Capsella rubella Carubv10027922m.g N
cassava10114.m1 Manihot esculenta cassava10114.m1 N
Ciclev10010497m.g Citrus clementina Ciclev10010497m.g N
orange1.1g041600m.g Citrus sinensis orange1.1g041600m.g N
SPRG_17213 Saprolegnia parasitica SPRG_17213 N
Thhalv10009656m.g Eutrema salsugineum Thhalv10009656m.g N
Thhalv10013525m.g Eutrema salsugineum Thhalv10013525m.g N