Solyc04g077210.2 (Solanum lycopersicum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Solyc04g077210.2 T223576_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KNAT7
M01064_2.00 		Arabidopsis thaliana
TGACRKST
ASMYGTCA		 PBM
Sullivan et al.(2014)
pTH9798 		0.723 0.510
KNAT4
M01238_2.00 		Arabidopsis thaliana
NNGACNNNN
NNNNGTCNN		 PBM
Lambert et al.(2019)
pTH9968 		0.723 0.490
KNAT3
M02051_2.00 		Arabidopsis thaliana
NNNGACVBNN
NNVBGTCNNN		 PBM
Weirauch et al.(2014)
pTH7600 		0.723 0.490
HOS66
M02156_2.00 		Oryza sativa
NNNNDHNN
NNDHNNNN		 PBM
Weirauch et al.(2014)
pTH8332 		0.710 0.510
PK25034.1
M01254_2.00 		Cannabis sativa
NNTGACRKBN
NVMYGTCANN		 PBM
Lambert et al.(2019)
pTH11259 		0.644 0.706
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.638 0.490
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.634 0.392
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.634 0.392
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.634 0.392
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.634 0.392
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.607 0.392
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc04g077210.2.1 Homeodomain 268 318

Links

Other Homeodomain family TFs
Other Solanum lycopersicum TFs

1225 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00018p00071850 Amborella trichopoda AMTR_s00018p00071850 I
AMTR_s00018p00074980 Amborella trichopoda AMTR_s00018p00074980 I
anac069 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002854 I
BGIOSGA027623 Oryza indica BGIOSGA027623 I
Bo9g004070 Brassica oleracea Bo9g004070 I
Bostr.4825s0023 Boechera stricta Bostr.4825s0023 I
Bra036328 Brassica rapa Bra036328 I
BRADI3G16480 Brachypodium distachyon BRADI3G16480 I
Ca_04069 Cicer arietinum Ca_04069 I
Ca_20988 Cicer arietinum Ca_20988 I
Ca_27204 Cicer arietinum Ca_27204 I
Cla002432 Citrullus lanatus Cla002432 N
Cucsa.273280 Cucumis sativus Cucsa.273280 N
Eucgr.J00531 Eucalyptus grandis Eucgr.J00531 I
evm.TU.supercontig_3.170 Carica papaya evm.TU.supercontig_3.170 N
F775_30082 Aegilops tauschii F775_30082 I
GLYMA02G38710 Glycine max GLYMA02G38710 N
GLYMA12G31211 Glycine max GLYMA12G31211 I
GLYMA14G36840 Glycine max GLYMA14G36840 I
Gorai.004G125900 Gossypium raimondii Gorai.004G125900 I
Gorai.006G203800 Gossypium raimondii Gorai.006G203800 I
Gorai.007G017500 Gossypium raimondii Gorai.007G017500 I
GRMZM2G003715 Zea mays GRMZM2G003715 I
GSMUA_Achr11G16860_001 Musa acuminata GSMUA_Achr11G16860_001 I
GSMUA_Achr1G03560_001 Musa acuminata GSMUA_Achr1G03560_001 I
GSMUA_Achr2G11810_001 Musa acuminata GSMUA_Achr2G11810_001 I
GSMUA_Achr3G00330_001 Musa acuminata GSMUA_Achr3G00330_001 I
GSMUA_Achr4G29170_001 Musa acuminata GSMUA_Achr4G29170_001 I
GSMUA_AchrUn_randomG04060_001 Musa acuminata GSMUA_AchrUn_randomG04060_001 I
LPERR08G03510 Leersia perrieri LPERR08G03510 I
Lus10015587.g Linum usitatissimum Lus10015587.g I
Lus10032919.g Linum usitatissimum Lus10032919.g I
MDP0000907489 Malus domestica MDP0000907489 N
mgf015836m Mimulus guttatus mgf015836m I
mgf022344m Mimulus guttatus mgf022344m I
MLOC_50406 Hordeum vulgare MLOC_50406 I
MTR_3g093050 Medicago truncatula MTR_3g093050 I
MTR_5g069030 Medicago truncatula MTR_5g069030 I
MTR_8g023840 Medicago truncatula MTR_8g023840 I
MTR_8g023860 Medicago truncatula MTR_8g023860 I
NAC69 Arabidopsis thaliana AT4G01550 D
OB08G13730 Oryza brachyantha OB08G13730 I
OBART08G03460 Oryza barthii OBART08G03460 I
OGLUM08G03540 Oryza glumaepatula OGLUM08G03540 I
OLONG_000105 Oryza longistaminata OLONG_000105 I
OMERI08G03500 Oryza meridionalis OMERI08G03500 I
ONIVA08G03440 Oryza nivara ONIVA08G03440 I
OPUNC08G03310 Oryza punctata OPUNC08G03310 I
orange1.1g021772m.g Citrus sinensis orange1.1g021772m.g N
ORGLA08G0029000 Oryza glaberrima ORGLA08G0029000 I
ORUFI08G03870 Oryza rufipogon ORUFI08G03870 I
OS08G0157900 Oryza sativa OS08G0157900 I
Pavir.Fa01901 Panicum virgatum Pavir.Fa01901 I
Pavir.Fb00405 Panicum virgatum Pavir.Fb00405 I
PGSC0003DMG400000555 Solanum tuberosum PGSC0003DMG400000555 I
Pm019659 Prunus mume Pm019659 I
POPTR_0002s15560 Populus trichocarpa POPTR_0002s15560 I
POPTR_0002s18290 Populus trichocarpa POPTR_0002s18290 I
POPTR_0002s18310 Populus trichocarpa POPTR_0002s18310 I
POPTR_0002s18320 Populus trichocarpa POPTR_0002s18320 I
POPTR_0014s07210 Populus trichocarpa POPTR_0014s07210 I
SapurV1A.0003s0330 Salix purpurea SapurV1A.0003s0330 I
SapurV1A.0024s0340 Salix purpurea SapurV1A.0024s0340 I
SapurV1A.0586s0170 Salix purpurea SapurV1A.0586s0170 I
Sb07g003900 Sorghum bicolor Sb07g003900 I
Si013369m.g Setaria italica Si013369m.g I
Solyc03g080090.2 Solanum lycopersicum Solyc03g080090.2 I
Solyc06g073050.2 Solanum lycopersicum Solyc06g073050.2 N
TCM_015535 Theobroma cacao TCM_015535 I
Traes_7AL_669D4AE47 Triticum aestivum Traes_7AL_669D4AE47 I
Traes_7BL_0C386426A Triticum aestivum Traes_7BL_0C386426A I
Traes_7DL_AB67A0B36 Triticum aestivum Traes_7DL_AB67A0B36 I
TRIUR3_32613 Triticum urartu TRIUR3_32613 I
VIT_15s0048g02300 Vitis vinifera VIT_15s0048g02300 N
VIT_15s0048g02320 Vitis vinifera VIT_15s0048g02320 I