Traes_1BL_43408C9B0 (Triticum aestivum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Traes_1BL_43408C9B0 T224108_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.849 0.929
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.849 0.929
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.849 0.929
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.844 0.857
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.844 0.857
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Traes_1BL_43408C9B0.2 Homeodomain 31 90

Links

Other Homeodomain family TFs
Other Triticum aestivum TFs

333 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT1G06070 Arabidopsis thaliana AT1G06070 D
Bo5g007170 Brassica oleracea Bo5g007170 I
Bo8g005940 Brassica oleracea Bo8g005940 I
Bostr.25219s0353 Boechera stricta Bostr.25219s0353 I
Bra015471 Brassica rapa Bra015471 I
Bra030637 Brassica rapa Bra030637 I
Cagra.1671s0236 Capsella grandiflora Cagra.1671s0236 I
Carubv10008993m.g Capsella rubella Carubv10008993m.g I
cassava32399.m1 Manihot esculenta cassava32399.m1 I
cassava43164.valid.m1 Manihot esculenta cassava43164.valid.m1 I
Ca_02692 Cicer arietinum Ca_02692 I
chr3.CM0106.340.nd Lotus japonicus chr3.CM0106.340.nd I
Cla022201 Citrullus lanatus Cla022201 I
Cla022204 Citrullus lanatus Cla022204 I
Cucsa.062530 Cucumis sativus Cucsa.062530 I
Cucsa.251880 Cucumis sativus Cucsa.251880 I
Eucgr.D00737 Eucalyptus grandis Eucgr.D00737 I
gene23487-v1.0-hybrid Fragaria vesca gene23487-v1.0-hybrid I
GLYMA11G13510 Glycine max GLYMA11G13510 I
GLYMA12G05520 Glycine max GLYMA12G05520 I
GLYMA13G42030 Glycine max GLYMA13G42030 I
GLYMA15G03350 Glycine max GLYMA15G03350 I
Gorai.005G015900 Gossypium raimondii Gorai.005G015900 I
Gorai.006G229500 Gossypium raimondii Gorai.006G229500 I
Gorai.011G140400 Gossypium raimondii Gorai.011G140400 I
Lus10008150.g Linum usitatissimum Lus10008150.g I
Lus10019376.g Linum usitatissimum Lus10019376.g I
MDP0000234166 Malus domestica MDP0000234166 I
MDP0000435971 Malus domestica MDP0000435971 I
MLOC_64781 Hordeum vulgare MLOC_64781 I
OB09G23080 Oryza brachyantha OB09G23080 I
OGLUM09G17020 Oryza glumaepatula OGLUM09G17020 I
OMERI09G12160 Oryza meridionalis OMERI09G12160 I
PK20942.1 Cannabis sativa PK20942.1 D
POPTR_0017s05610 Populus trichocarpa POPTR_0017s05610 I
RF2A Oryza sativa OS09G0516200 I
scaffold_100594.1 Arabidopsis lyrata scaffold_100594.1 I
Solyc06g053350.2 Solanum lycopersicum Solyc06g053350.2 I
TCM_019998 Theobroma cacao TCM_019998 I
Thhalv10007692m.g Eutrema salsugineum Thhalv10007692m.g I
Traes_7DS_47B5A7FFF Triticum aestivum Traes_7DS_47B5A7FFF I
TRIUR3_16287 Triticum urartu TRIUR3_16287 I
VIT_05s0102g01120 Vitis vinifera VIT_05s0102g01120 I