Cla015624 (Citrullus lanatus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cla015624 T225607_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.810 0.735
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.626 0.571
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.602 0.429
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.602 0.429
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.602 0.429
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.602 0.429
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla015624 Homeodomain 344 395

Links

Other Homeodomain family TFs
Other Citrullus lanatus TFs

1001 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA036334 Oryza indica BGIOSGA036334 N 0.000
OBART12G09480 Oryza barthii OBART12G09480 N 0.000
OGLUM12G10670 Oryza glumaepatula OGLUM12G10670 N 0.000
OLONG_012662 Oryza longistaminata OLONG_012662 N 0.000
ONIVA12G01620 Oryza nivara ONIVA12G01620 N 0.000
OPUNC12G08600 Oryza punctata OPUNC12G08600 N 0.000
ORGLA12G0089800 Oryza glaberrima ORGLA12G0089800 N 0.000
ORUFI12G10530 Oryza rufipogon ORUFI12G10530 N 0.000