Myotis_brandtii_SIX6_10027189 (Myotis brandtii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Myotis_brandtii_SIX6_10027189 T226448_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.867 1.000
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.867 1.000
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.867 1.000
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.867 1.000
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.867 1.000
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.865 0.982
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.865 0.982
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.865 0.982
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.982
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.865 0.982
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.865 0.947
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.865 0.930
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.865 0.930
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.865 0.930
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.865 0.930
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.865 0.930
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.860 0.982
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Myotis_brandtii_SIX6_10027189 Homeodomain 145 201

Links

Other Homeodomain family TFs
Other Myotis brandtii TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00017p00086440 Amborella trichopoda AMTR_s00017p00086440 I
Aquca_017_00778 Aquilegia coerulea Aquca_017_00778 I
Bo8g027000 Brassica oleracea Bo8g027000 I
Bostr.1040s0032 Boechera stricta Bostr.1040s0032 I
Cagra.12398s0002 Capsella grandiflora Cagra.12398s0002 I
Carubv10008876m.g Capsella rubella Carubv10008876m.g I
cassava22193.valid.m1 Manihot esculenta cassava22193.valid.m1 I
cassava24483.valid.m1 Manihot esculenta cassava24483.valid.m1 I
Ca_04300 Cicer arietinum Ca_04300 I
Cla016623 Citrullus lanatus Cla016623 I
Cucsa.079940 Cucumis sativus Cucsa.079940 I
gene27486-v1.0-hybrid Fragaria vesca gene27486-v1.0-hybrid I
GLYMA10G35940 Glycine max GLYMA10G35940 I
GLYMA16G27280 Glycine max GLYMA16G27280 I
GLYMA20G31650 Glycine max GLYMA20G31650 I
GSMUA_Achr5G01170_001 Musa acuminata GSMUA_Achr5G01170_001 I
LPERR03G34390 Leersia perrieri LPERR03G34390 I
MDP0000141403 Malus domestica MDP0000141403 I
MDP0000199559 Malus domestica MDP0000199559 I
MDP0000551046 Malus domestica MDP0000551046 I
MDP0000807856 Malus domestica MDP0000807856 I
mgf000060m Mimulus guttatus mgf000060m I
Pavir.Ia00191 Panicum virgatum Pavir.Ia00191 I
Pavir.J01834 Panicum virgatum Pavir.J01834 I
Pavir.J06328 Panicum virgatum Pavir.J06328 I
Pavir.J12018 Panicum virgatum Pavir.J12018 I
PDK_20s1338731g001 Phoenix dactylifera PDK_20s1338731g001 I
PK23301.1 Cannabis sativa PK23301.1 I
Pm022201 Prunus mume Pm022201 I
POPTR_0019s11520 Populus trichocarpa POPTR_0019s11520 I
PRUPE_ppa004510mg Prunus persica PRUPE_ppa004510mg I
SapurV1A.0287s0150 Salix purpurea SapurV1A.0287s0150 I
SapurV1A.2334s0030 Salix purpurea SapurV1A.2334s0030 I
Sb01g001950 Sorghum bicolor Sb01g001950 I
SELMODRAFT_48272 Selaginella moellendorffii SELMODRAFT_48272 I
SELMODRAFT_58350 Selaginella moellendorffii SELMODRAFT_58350 I
Si036555m.g Setaria italica Si036555m.g I
STOP1 Vitis vinifera VIT_18s0072g00840 I
STOP1 Arabidopsis lyrata fgenesh2_kg.1__3547__AT1G34370.2 I
STOP1 Arabidopsis thaliana AT1G34370 D
Thhalv10007411m.g Eutrema salsugineum Thhalv10007411m.g I