Bostr.3877s0047 (Boechera stricta)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Bostr.3877s0047 T228151_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KNAT6
M02037_2.00 		Arabidopsis thaliana
NNWGACNNNN
NNNNGTCWNN		 PBM
Weirauch et al.(2014)
pTH7296 		0.818 0.821
KNOX3_HORVU
M10790_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$KNOX3_01 		0.814 0.929
GRMZM2G135447
M02139_2.00 		Zea mays
DTGACRKS
SMYGTCAH		 PBM
Weirauch et al.(2014)
pTH6328 		0.803 0.911
GRMZM2G087741
M02138_2.00 		Zea mays
NNTGACRKCN
NGMYGTCANN		 PBM
Weirauch et al.(2014)
pTH5816 		0.795 0.750
PK25034.1
M01254_2.00 		Cannabis sativa
NNTGACRKBN
NVMYGTCANN		 PBM
Lambert et al.(2019)
pTH11259 		0.741 0.893
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.3877s0047.1.p Homeodomain 299 357

Links

Other Homeodomain family TFs
Other Boechera stricta TFs

323 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI1G42440 Brachypodium distachyon BRADI1G42440 N 0.000
F775_02947 Aegilops tauschii F775_02947 N 0.000
MLOC_37511 Hordeum vulgare MLOC_37511 N 0.000
OB0081G10010 Oryza brachyantha OB0081G10010 N 0.000
OMERI06G16990 Oryza meridionalis OMERI06G16990 N 0.000
ONIVA06G18720 Oryza nivara ONIVA06G18720 N 0.000
OPUNC06G14520 Oryza punctata OPUNC06G14520 N 0.000
ORGLA06G0131200 Oryza glaberrima ORGLA06G0131200 N 0.000
OS06G0496400 Oryza sativa OS06G0496400 N 0.000
Pavir.Db01008 Panicum virgatum Pavir.Db01008 N 0.000
SELMODRAFT_418491 Selaginella moellendorffii SELMODRAFT_418491 N 0.000
SELMODRAFT_423809 Selaginella moellendorffii SELMODRAFT_423809 N 0.000
Traes_7BS_A0A8B25DF Triticum aestivum Traes_7BS_A0A8B25DF N 0.000
Traes_7DS_4053B6E88 Triticum aestivum Traes_7DS_4053B6E88 N 0.000
TRIUR3_14379 Triticum urartu TRIUR3_14379 N 0.000