Pavir.Db01008 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.Db01008 T050729_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Db01008.1.p bHLH 186 234

Links

Other bHLH family TFs
Other Panicum virgatum TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI1G42440 Brachypodium distachyon BRADI1G42440 N 0.914
F775_02947 Aegilops tauschii F775_02947 N 0.914
MLOC_37511 Hordeum vulgare MLOC_37511 N 0.914
Traes_7BS_A0A8B25DF Triticum aestivum Traes_7BS_A0A8B25DF N 0.914
Traes_7DS_4053B6E88 Triticum aestivum Traes_7DS_4053B6E88 N 0.914
TRIUR3_14379 Triticum urartu TRIUR3_14379 N 0.914
SELMODRAFT_418491 Selaginella moellendorffii SELMODRAFT_418491 N 0.894
SELMODRAFT_423809 Selaginella moellendorffii SELMODRAFT_423809 N 0.894
OB0081G10010 Oryza brachyantha OB0081G10010 N 0.884
AC216731.3_FG001 Zea mays AC216731.3_FG001 N 0.882
AMTR_s00024p00250370 Amborella trichopoda AMTR_s00024p00250370 N 0.882
BHLH83 Arabidopsis thaliana AT1G66470 N 0.882
BHLH86 Arabidopsis thaliana AT5G37800 N 0.882
BGIOSGA002533 Oryza indica BGIOSGA002533 N 0.882
BGIOSGA008903 Oryza indica BGIOSGA008903 N 0.882
Bo00835s050 Brassica oleracea Bo00835s050 N 0.882
Bo6g101000 Brassica oleracea Bo6g101000 N 0.882
Bra019708 Brassica rapa Bra019708 N 0.882
BRADI2G01000 Brachypodium distachyon BRADI2G01000 N 0.882
F775_23458 Aegilops tauschii F775_23458 N 0.882
RSL1 Arabidopsis lyrata fgenesh2_kg.7__3192__AT5G37800.1 N 0.882
GLYMA02G41370 Glycine max GLYMA02G41370 N 0.882
GLYMA11G33840 Glycine max GLYMA11G33840 N 0.882
GLYMA14G07590 Glycine max GLYMA14G07590 N 0.882
GLYMA18G04420 Glycine max GLYMA18G04420 N 0.882
GSMUA_Achr10G20230_001 Musa acuminata GSMUA_Achr10G20230_001 N 0.882
GSMUA_Achr2G22860_001 Musa acuminata GSMUA_Achr2G22860_001 N 0.882
GSMUA_Achr6G09370_001 Musa acuminata GSMUA_Achr6G09370_001 N 0.882
LPERR01G00690 Leersia perrieri LPERR01G00690 N 0.882
LPERR02G24230 Leersia perrieri LPERR02G24230 N 0.882
MTR_5g079500 Medicago truncatula MTR_5g079500 N 0.882
OB01G10850 Oryza brachyantha OB01G10850 N 0.882
OB02G36990 Oryza brachyantha OB02G36990 N 0.882
OBART01G00850 Oryza barthii OBART01G00850 N 0.882
OBART02G29800 Oryza barthii OBART02G29800 N 0.882
OGLUM01G00830 Oryza glumaepatula OGLUM01G00830 N 0.882
OGLUM02G30450 Oryza glumaepatula OGLUM02G30450 N 0.882
OLONG_010619 Oryza longistaminata OLONG_010619 N 0.882
OMERI01G00290 Oryza meridionalis OMERI01G00290 N 0.882
OMERI02G28660 Oryza meridionalis OMERI02G28660 N 0.882
ONIVA01G00780 Oryza nivara ONIVA01G00780 N 0.882
ONIVA02G32560 Oryza nivara ONIVA02G32560 N 0.882
OPUNC01G00700 Oryza punctata OPUNC01G00700 N 0.882
OPUNC02G27370 Oryza punctata OPUNC02G27370 N 0.882
ORGLA01G0007400 Oryza glaberrima ORGLA01G0007400 N 0.882
ORGLA02G0253300 Oryza glaberrima ORGLA02G0253300 N 0.882
ORUFI01G00830 Oryza rufipogon ORUFI01G00830 N 0.882
ORUFI02G31420 Oryza rufipogon ORUFI02G31420 N 0.882
OS01G0111500 Oryza sativa OS01G0111500 N 0.882
OS02G0710300 Oryza sativa OS02G0710300 N 0.882
PGSC0003DMG400030650 Solanum tuberosum PGSC0003DMG400030650 N 0.882
POPTR_0004s08770 Populus trichocarpa POPTR_0004s08770 N 0.882
POPTR_0005s14360 Populus trichocarpa POPTR_0005s14360 N 0.882
PRUPE_ppa025775mg Prunus persica PRUPE_ppa025775mg N 0.882
Sb04g030230 Sorghum bicolor Sb04g030230 N 0.882
RHD6 Arabidopsis lyrata scaffold_201372.1 N 0.882
Si019575m.g Setaria italica Si019575m.g N 0.882
Solyc02g091440.1 Solanum lycopersicum Solyc02g091440.1 N 0.882
TCM_019210 Theobroma cacao TCM_019210 N 0.882
Traes_3AS_0D78930B4 Triticum aestivum Traes_3AS_0D78930B4 N 0.882
TRAES3BF060500180CFD_g Triticum aestivum TRAES3BF060500180CFD_g N 0.882
TRIUR3_11692 Triticum urartu TRIUR3_11692 N 0.882
VIT_14s0006g01470 Vitis vinifera VIT_14s0006g01470 N 0.882
Ca_16136 Cicer arietinum Ca_16136 N 0.882
Cla020067 Citrullus lanatus Cla020067 N 0.882
Pm014359 Prunus mume Pm014359 N 0.882
28609.m000209 Ricinus communis 28609.m000209 N 0.882
cassava10199.m1 Manihot esculenta cassava10199.m1 N 0.882
Cucsa.006340 Cucumis sativus Cucsa.006340 N 0.882
mgf025678m Mimulus guttatus mgf025678m N 0.882
Aquca_041_00164 Aquilegia coerulea Aquca_041_00164 N 0.882
Bostr.26959s0271 Boechera stricta Bostr.26959s0271 N 0.882
Bostr.9638s0100 Boechera stricta Bostr.9638s0100 N 0.882
Cagra.2629s0001 Capsella grandiflora Cagra.2629s0001 N 0.882
Carubv10007389m.g Capsella rubella Carubv10007389m.g N 0.882
Carubv10021322m.g Capsella rubella Carubv10021322m.g N 0.882
Ciclev10013420m.g Citrus clementina Ciclev10013420m.g N 0.882
Eucgr.F02831 Eucalyptus grandis Eucgr.F02831 N 0.882
evm.TU.contig_27490 Carica papaya evm.TU.contig_27490 N 0.882
gene17937-v1.0-hybrid Fragaria vesca gene17937-v1.0-hybrid N 0.882
Gorai.001G086800 Gossypium raimondii Gorai.001G086800 N 0.882
Gorai.004G064400 Gossypium raimondii Gorai.004G064400 N 0.882
Lus10017634.g Linum usitatissimum Lus10017634.g N 0.882
Lus10033592.g Linum usitatissimum Lus10033592.g N 0.882
MDP0000435722 Malus domestica MDP0000435722 N 0.882
orange1.1g038918m.g Citrus sinensis orange1.1g038918m.g N 0.882
Pavir.Aa00611 Panicum virgatum Pavir.Aa00611 N 0.882
Pavir.J04215 Panicum virgatum Pavir.J04215 N 0.882
Pavir.J20533 Panicum virgatum Pavir.J20533 N 0.882
SapurV1A.0102s0280 Salix purpurea SapurV1A.0102s0280 N 0.882
SapurV1A.0230s0340 Salix purpurea SapurV1A.0230s0340 N 0.882
Thhalv10018927m.g Eutrema salsugineum Thhalv10018927m.g N 0.882
Thhalv10028239m.g Eutrema salsugineum Thhalv10028239m.g N 0.882
Si004720m.g Setaria italica Si004720m.g N 0.879
Pavir.Eb00817 Panicum virgatum Pavir.Eb00817 N 0.879
BGIOSGA022967 Oryza indica BGIOSGA022967 N 0.863
OMERI06G16990 Oryza meridionalis OMERI06G16990 N 0.863
ONIVA06G18720 Oryza nivara ONIVA06G18720 N 0.863
ORGLA06G0131200 Oryza glaberrima ORGLA06G0131200 N 0.863
OS06G0496400 Oryza sativa OS06G0496400 N 0.863
SELMODRAFT_413232 Selaginella moellendorffii SELMODRAFT_413232 N 0.862
SELMODRAFT_426794 Selaginella moellendorffii SELMODRAFT_426794 N 0.862
SELMODRAFT_409967 Selaginella moellendorffii SELMODRAFT_409967 N 0.860
SELMODRAFT_414414 Selaginella moellendorffii SELMODRAFT_414414 N 0.860
estExt_fgenesh1_pg.C_1470079 Physcomitrella patens estExt_fgenesh1_pg.C_1470079 N 0.856
estExt_fgenesh1_pg.C_840011 Physcomitrella patens estExt_fgenesh1_pg.C_840011 N 0.856
GSMUA_Achr3G01250_001 Musa acuminata GSMUA_Achr3G01250_001 N 0.852
BRADI3G53060 Brachypodium distachyon BRADI3G53060 N 0.847
Cagra.8123s0001 Capsella grandiflora Cagra.8123s0001 N 0.847
GRMZM2G066057 Zea mays GRMZM2G066057 N 0.844
Sb03g008290 Sorghum bicolor Sb03g008290 N 0.844