Cagra.5224s0008 (Capsella grandiflora)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cagra.5224s0008 T228253_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.838 0.667
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.626 0.542
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.606 0.417
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.606 0.417
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.606 0.417
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.606 0.417
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.5224s0008.1.p Homeodomain 465 515
Cagra.5224s0008.2.p Homeodomain 465 515

Links

Other Homeodomain family TFs
Other Capsella grandiflora TFs

1013 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29801.m003163 Ricinus communis 29801.m003163 N 0.000
30170.m013700 Ricinus communis 30170.m013700 N 0.000
AMTR_s00017p00226990 Amborella trichopoda AMTR_s00017p00226990 N 0.000
BHLH95 Arabidopsis thaliana AT1G49770 N 0.000
Bo5g076460 Brassica oleracea Bo5g076460 N 0.000
Bo6g018390 Brassica oleracea Bo6g018390 N 0.000
Bostr.26675s0191 Boechera stricta Bostr.26675s0191 N 0.000
Bra018796 Brassica rapa Bra018796 N 0.000
Bra040671 Brassica rapa Bra040671 N 0.000
Cagra.2481s0020 Capsella grandiflora Cagra.2481s0020 N 0.000
Carubv10011964m.g Capsella rubella Carubv10011964m.g N 0.000
cassava46929.m1 Manihot esculenta cassava46929.m1 N 0.000
cassava47360.m1 Manihot esculenta cassava47360.m1 N 0.000
cassava9129.m1 Manihot esculenta cassava9129.m1 N 0.000
Ciclev10030106m.g Citrus clementina Ciclev10030106m.g N 0.000
Cla016266 Citrullus lanatus Cla016266 N 0.000
Cucsa.219850 Cucumis sativus Cucsa.219850 N 0.000
Gorai.002G135000 Gossypium raimondii Gorai.002G135000 N 0.000
GSMUA_Achr9G08780_001 Musa acuminata GSMUA_Achr9G08780_001 N 0.000
Lus10024812.g Linum usitatissimum Lus10024812.g N 0.000
MDP0000484847 Malus domestica MDP0000484847 N 0.000
orange1.1g037241m.g Citrus sinensis orange1.1g037241m.g N 0.000
Pm005302 Prunus mume Pm005302 N 0.000
Pm021290 Prunus mume Pm021290 N 0.000
POPTR_0014s02600 Populus trichocarpa POPTR_0014s02600 N 0.000
PRUPE_ppa018148mg Prunus persica PRUPE_ppa018148mg N 0.000
PRUPE_ppa022683mg Prunus persica PRUPE_ppa022683mg N 0.000
RGE1 Vitis vinifera VIT_03s0063g00170 N 0.000
RGE1 Populus trichocarpa POPTR_0001s31250 N 0.000
RGE1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1003696 N 0.000
SapurV1A.0005s1150 Salix purpurea SapurV1A.0005s1150 N 0.000
SapurV1A.0643s0100 Salix purpurea SapurV1A.0643s0100 N 0.000
TCM_007083 Theobroma cacao TCM_007083 N 0.000
TCM_033803 Theobroma cacao TCM_033803 N 0.000
Thhalv10012185m.g Eutrema salsugineum Thhalv10012185m.g N 0.000
VIT_18s0001g10300 Vitis vinifera VIT_18s0001g10300 N 0.000