Carubv10004175m.g (Capsella rubella)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Carubv10004175m.g T228284_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MTR_2g038000
M02141_2.00 		Medicago truncatula
NDNYWNNNNN
NNNNNWRNHN		 PBM
Weirauch et al.(2014)
pTH6339 		0.673 0.709
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10004175m Homeodomain 454 508

Links

Other Homeodomain family TFs
Other Capsella rubella TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29671.m000294 Ricinus communis 29671.m000294 I 0.638
Bo1g014710 Brassica oleracea Bo1g014710 I 0.812
Bo3g175850 Brassica oleracea Bo3g175850 I 0.768
Bostr.7867s0841 Boechera stricta Bostr.7867s0841 I 0.852
Bra010310 Brassica rapa Bra010310 I 0.768
Bra011153 Brassica rapa Bra011153 I 0.820
Cagra.0268s0009 Capsella grandiflora Cagra.0268s0009 I 0.867
cassava27173.m1 Manihot esculenta cassava27173.m1 I 0.669
Ca_08838 Cicer arietinum Ca_08838 I 0.654
chr4.CM0244.10.nd Lotus japonicus chr4.CM0244.10.nd I 0.657
Eucgr.C00114 Eucalyptus grandis Eucgr.C00114 I 0.710
gene17249-v1.0-hybrid Fragaria vesca gene17249-v1.0-hybrid I 0.670
GLYMA09G06730 Glycine max GLYMA09G06730 I 0.683
GLYMA13G00540 Glycine max GLYMA13G00540 I 0.617
GLYMA15G17956 Glycine max GLYMA15G17956 I 0.652
GLYMA17G06690 Glycine max GLYMA17G06690 I 0.617
Gorai.009G002500 Gossypium raimondii Gorai.009G002500 I 0.644
mgf003961m Mimulus guttatus mgf003961m I 0.634
MTR_2g038000 Medicago truncatula MTR_2g038000 D 0.673
Pm008905 Prunus mume Pm008905 I 0.660
POPTR_0006s07520 Populus trichocarpa POPTR_0006s07520 N 0.679
POPTR_0018s13920 Populus trichocarpa POPTR_0018s13920 N 0.680
PRH Arabidopsis thaliana AT4G29940 I 0.809
PRHA Arabidopsis lyrata scaffold_701235.1 I 0.823
PRUPE_ppa023964mg Prunus persica PRUPE_ppa023964mg I 0.660
SapurV1A.0140s0170 Salix purpurea SapurV1A.0140s0170 N 0.682
Thhalv10024489m.g Eutrema salsugineum Thhalv10024489m.g I 0.852