Carubv10028391m.g (Capsella rubella)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Carubv10028391m.g T228360_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZHD7
M02155_2.00 		Oryza sativa
NNWAANNNNN
NNNNNTTWNN		 PBM
Weirauch et al.(2014)
pTH6076 		0.651 0.582
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10028391m Homeodomain 100 158

Links

Other Homeodomain family TFs
Other Capsella rubella TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA013705 Oryza indica BGIOSGA013705 N
BGIOSGA029005 Oryza indica BGIOSGA029005 N
F775_04514 Aegilops tauschii F775_04514 N
GRMZM2G132667 Zea mays GRMZM2G132667 N
LPERR03G31200 Leersia perrieri LPERR03G31200 N
LPERR08G17300 Leersia perrieri LPERR08G17300 N
OB08G27360 Oryza brachyantha OB08G27360 N
OBART08G20460 Oryza barthii OBART08G20460 N
OGLUM03G36620 Oryza glumaepatula OGLUM03G36620 N
OGLUM08G21760 Oryza glumaepatula OGLUM08G21760 N
OMERI02G02130 Oryza meridionalis OMERI02G02130 N
ONIVA08G23410 Oryza nivara ONIVA08G23410 N
OPUNC03G33890 Oryza punctata OPUNC03G33890 N
ORUFI08G22960 Oryza rufipogon ORUFI08G22960 N
Pavir.Cb01140 Panicum virgatum Pavir.Cb01140 N
Pavir.Fb01953 Panicum virgatum Pavir.Fb01953 N
Pavir.J04242 Panicum virgatum Pavir.J04242 N
Pavir.J05299 Panicum virgatum Pavir.J05299 N
Pavir.J09684 Panicum virgatum Pavir.J09684 N
Sb01g005700 Sorghum bicolor Sb01g005700 N
Sb07g026800 Sorghum bicolor Sb07g026800 N
Si015521m.g Setaria italica Si015521m.g N
TRIUR3_34186 Triticum urartu TRIUR3_34186 N