gene13035-v1.0-hybrid (Fragaria vesca)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 gene13035-v1.0-hybrid T228603_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WOX13
M02049_2.00 		Arabidopsis thaliana
YTGATTGA
TCAATCAR		 PBM
Weirauch et al.(2014)
pTH6461 		0.867 0.877
WOX13
M00866_2.00 		Arabidopsis thaliana
NNTGATTGAN
NTCAATCANN		 PBM
Franco-Zorrilla et al.(2014)
WOX13 		0.867 0.877
GRMZM2G038252
M02137_2.00 		Zea mays
HTRATTGV
BCAATYAD		 PBM
Weirauch et al.(2014)
pTH6141 		0.854 0.895
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna13035.1-v1.0-hybrid Homeodomain 90 151

Links

Other Homeodomain family TFs
Other Fragaria vesca TFs

345 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30128.m009035 Ricinus communis 30128.m009035 I 0.000
ANAC041 Arabidopsis lyrata fgenesh2_kg.4__1354__AT2G33480.1 I 0.000
ANAC083 Vitis vinifera VIT_01s0146g00280 I 0.000
ANAC083 Arabidopsis lyrata scaffold_601328.1 I 0.000
Aquca_021_00051 Aquilegia coerulea Aquca_021_00051 I 0.000
Bo4g043670 Brassica oleracea Bo4g043670 I 0.000
Bo4g181990 Brassica oleracea Bo4g181990 I 0.000
Bostr.2902s0053 Boechera stricta Bostr.2902s0053 I 0.000
Bra005492 Brassica rapa Bra005492 I 0.000
Bra021856 Brassica rapa Bra021856 I 0.000
Cagra.0301s0034 Capsella grandiflora Cagra.0301s0034 N 0.000
Cagra.0596s0010 Capsella grandiflora Cagra.0596s0010 I 0.000
Carubv10002548m.g Capsella rubella Carubv10002548m.g I 0.000
Carubv10023833m.g Capsella rubella Carubv10023833m.g N 0.000
cassava1138.valid.m1 Manihot esculenta cassava1138.valid.m1 I 0.000
cassava12891.valid.m1 Manihot esculenta cassava12891.valid.m1 I 0.000
chr1.CM0017.80.nc Lotus japonicus chr1.CM0017.80.nc I 0.000
Ciclev10032547m.g Citrus clementina Ciclev10032547m.g I 0.000
Cla001517 Citrullus lanatus Cla001517 I 0.000
Cucsa.349370 Cucumis sativus Cucsa.349370 I 0.000
Eucgr.B03537 Eucalyptus grandis Eucgr.B03537 I 0.000
GLYMA08G47520 Glycine max GLYMA08G47520 I 0.000
GLYMA18G53954 Glycine max GLYMA18G53954 I 0.000
Gorai.005G195300 Gossypium raimondii Gorai.005G195300 I 0.000
Gorai.012G125500 Gossypium raimondii Gorai.012G125500 I 0.000
Lus10001809.g Linum usitatissimum Lus10001809.g I 0.000
Lus10002581.g Linum usitatissimum Lus10002581.g I 0.000
MDP0000126517 Malus domestica MDP0000126517 I 0.000
MDP0000130123 Malus domestica MDP0000130123 I 0.000
MTR_7g005280 Medicago truncatula MTR_7g005280 I 0.000
NAC041 Arabidopsis thaliana AT2G33480 I 0.000
NAC083 Arabidopsis thaliana AT5G13180 D 0.000
orange1.1g030727m.g Citrus sinensis orange1.1g030727m.g I 0.000
PK12461.1 Cannabis sativa PK12461.1 I 0.000
Pm007070 Prunus mume Pm007070 I 0.000
POPTR_0001s13380 Populus trichocarpa POPTR_0001s13380 I 0.000
POPTR_0003s16490 Populus trichocarpa POPTR_0003s16490 I 0.000
PRUPE_ppa010222mg Prunus persica PRUPE_ppa010222mg I 0.000
SapurV1A.0173s0020 Salix purpurea SapurV1A.0173s0020 I 0.000
SapurV1A.0453s0210 Salix purpurea SapurV1A.0453s0210 I 0.000
TCM_008477 Theobroma cacao TCM_008477 I 0.000
Thhalv10017152m.g Eutrema salsugineum Thhalv10017152m.g I 0.000