Gorai.003G143600 (Gossypium raimondii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gorai.003G143600 T228692_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.810 0.638
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.638 0.574
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.606 0.426
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.606 0.426
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.606 0.426
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.606 0.426
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.003G143600.1 Homeodomain 484 533
Gorai.003G143600.2 Homeodomain 484 533

Links

Other Homeodomain family TFs
Other Gossypium raimondii TFs

1005 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BN946_scf184576.g4 Trametes cinnabarina BN946_scf184576.g4 I
CERSUDRAFT_79927 Ceriporiopsis subvermispora CERSUDRAFT_79927 I
fgenesh2_pg.C_scaffold_1000086 Heterobasidion annosum fgenesh2_pg.C_scaffold_1000086 I
FOMPIDRAFT_1133812 Fomitopsis pinicola FOMPIDRAFT_1133812 I
GALMADRAFT_271364 Galerina marginata GALMADRAFT_271364 N
GLOTRDRAFT_30797 Gloeophyllum trabeum GLOTRDRAFT_30797 I
K443DRAFT_97730 Laccaria amethystina K443DRAFT_97730 N
LACBIDRAFT_308011 Laccaria bicolor LACBIDRAFT_308011 N
M378DRAFT_80917 Amanita muscaria M378DRAFT_80917 N
PAXINDRAFT_83471 Paxillus involutus PAXINDRAFT_83471 I
PAXRUDRAFT_833407 Paxillus rubicundulus PAXRUDRAFT_833407 I
PILCRDRAFT_254451 Piloderma croceum PILCRDRAFT_254451 N
PLEOSDRAFT_1089905 Pleurotus ostreatus PLEOSDRAFT_1089905 N
POSPLDRAFT_106184 Postia placenta POSPLDRAFT_106184 I
SCHCODRAFT_258883 Schizophyllum commune SCHCODRAFT_258883 D
SCLCIDRAFT_125598 Scleroderma citrinum SCLCIDRAFT_125598 N
SERLA73DRAFT_115823 Serpula lacrymans SERLA73DRAFT_115823 I
SERLA73DRAFT_143290 Serpula lacrymans SERLA73DRAFT_143290 N