MDP0000502194 (Malus domestica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 MDP0000502194 T229087_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.685 0.836
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.685 0.836
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.685 0.836
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.681 0.873
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.681 0.873
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000502194 Homeodomain 19 78

Links

Other Homeodomain family TFs
Other Malus domestica TFs

321 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ALNC14_029500 Albugo laibachii ALNC14_029500 N 0.000
estExt_fgenesh1_kg.C_200097 Phytophthora capsici estExt_fgenesh1_kg.C_200097 N 0.000
estExt_fgenesh1_kg.C_260006 Phytophthora capsici estExt_fgenesh1_kg.C_260006 N 0.000
estExt_fgenesh1_pg.C_40260 Phytophthora capsici estExt_fgenesh1_pg.C_40260 N 0.000
F443_03220 Phytophthora parasitica F443_03220 N 0.000
F443_03239 Phytophthora parasitica F443_03239 N 0.000
F443_14270 Phytophthora parasitica F443_14270 N 0.000
fgenesh1_pg.C_scaffold_11000265 Phytophthora capsici fgenesh1_pg.C_scaffold_11000265 N 0.000
fgenesh_masked-pir_contig_142-abinit-gene-0.47 Pythium irregulare fgenesh_masked-pir_contig_142-abinit-gene-0.47 N 0.000
fgenesh_scip_prom.28083.12018 Phytophthora lateralis fgenesh_scip_prom.28083.12018 N 0.000
fgenesh_scip_prom.28083.3853 Phytophthora lateralis fgenesh_scip_prom.28083.3853 N 0.000
fgenesh_scip_prom.46568.7327 Phytophthora kernoviae fgenesh_scip_prom.46568.7327 N 0.000
fgenesh_scip_prom.46568.8840 Phytophthora kernoviae fgenesh_scip_prom.46568.8840 I 0.000
HpaG810857 Hyaloperonospora arabidopsidis HpaG810857 I 0.000
HpaG811475 Hyaloperonospora arabidopsidis HpaG811475 N 0.000
maker-pag1_scaffold_151-fgenesh-gene-0.1 Pythium aphanidermatum maker-pag1_scaffold_151-fgenesh-gene-0.1 I 0.000
maker-pag1_scaffold_154-snap-gene-0.25 Pythium aphanidermatum maker-pag1_scaffold_154-snap-gene-0.25 N 0.000
maker-pag1_scaffold_154-snap-gene-0.26 Pythium aphanidermatum maker-pag1_scaffold_154-snap-gene-0.26 N 0.000
maker-pag1_scaffold_266-snap-gene-0.11 Pythium aphanidermatum maker-pag1_scaffold_266-snap-gene-0.11 I 0.000
maker-par_contig_2748-snap-gene-0.2 Pythium arrhenomanes maker-par_contig_2748-snap-gene-0.2 I 0.000
maker-par_contig_8416-snap-gene-0.0 Pythium arrhenomanes maker-par_contig_8416-snap-gene-0.0 N 0.000
maker-pir_contig_1094-fgenesh-gene-0.0 Pythium irregulare maker-pir_contig_1094-fgenesh-gene-0.0 N 0.000
maker-pir_contig_516-fgenesh-gene-0.8 Pythium irregulare maker-pir_contig_516-fgenesh-gene-0.8 N 0.000
maker-pir_contig_524-snap-gene-0.12 Pythium irregulare maker-pir_contig_524-snap-gene-0.12 N 0.000
maker-pir_contig_548-fgenesh-gene-0.3 Pythium irregulare maker-pir_contig_548-fgenesh-gene-0.3 I 0.000
maker-piw_contig_1647-fgenesh-gene-0.1 Pythium iwayamai maker-piw_contig_1647-fgenesh-gene-0.1 N 0.000
maker-piw_contig_1647-snap-gene-0.3 Pythium iwayamai maker-piw_contig_1647-snap-gene-0.3 N 0.000
maker-piw_contig_50-fgenesh-gene-0.1 Pythium iwayamai maker-piw_contig_50-fgenesh-gene-0.1 I 0.000
maker-piw_contig_637-fgenesh-gene-0.5 Pythium iwayamai maker-piw_contig_637-fgenesh-gene-0.5 I 0.000
maker-pve_contig_364-fgenesh-gene-0.6 Pythium vexans maker-pve_contig_364-fgenesh-gene-0.6 N 0.000
Phyra73305 Phytophthora ramorum Phyra73305 N 0.000
Phyra73321 Phytophthora ramorum Phyra73321 N 0.000
Physo131312 Phytophthora sojae Physo131312 N 0.000
Physo131337 Phytophthora sojae Physo131337 N 0.000
PITG_02143 Phytophthora infestans PITG_02143 N 0.000
PITG_11731 Phytophthora infestans PITG_11731 N 0.000
PITG_19362 Phytophthora infestans PITG_19362 N 0.000
PK06453.1 Cannabis sativa PK06453.1 I 0.000
PYU1_G002849 Pythium ultimum PYU1_G002849 I 0.000
PYU1_G003089 Pythium ultimum PYU1_G003089 N 0.000
PYU1_G003099 Pythium ultimum PYU1_G003099 N 0.000
PYU1_G003105 Pythium ultimum PYU1_G003105 N 0.000
SPRG_13461 Saprolegnia parasitica SPRG_13461 N 0.000
SPRG_16889 Saprolegnia parasitica SPRG_16889 N 0.000
SPRG_16890 Saprolegnia parasitica SPRG_16890 N 0.000