Pavir.Ia04906 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.Ia04906 T229303_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
estExt_gwp_gw1.C_70211
M02220_2.00 		Physcomitrella patens
HMATNANDNN
NNHNTNATKD		 PBM
Weirauch et al.(2014)
pTH8489 		0.842 0.750
ATHB-13
M06900_2.00 		Arabidopsis thaliana
HYAATAATTDD
HHAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB13_col_a 		0.822 0.696
ATHB-13
M06901_2.00 		Arabidopsis thaliana
NYAATAATTRW
WYAATTATTRN		 Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a 		0.822 0.696
HAT5
M06914_2.00 		Arabidopsis thaliana
NHAATAATTDW
WHAATTATTDN		 Dap-seq
OMalley et al.(2016)
HAT5_col_a 		0.813 0.732
HAT5
M06915_2.00 		Arabidopsis thaliana
WNYAATAATTRWDN
NHWYAATTATTRNW		 Dap-seq
OMalley et al.(2016)
HAT5_colamp_a 		0.813 0.732
HAT5
M02683_2.00 		Arabidopsis thaliana
SCAATAATTNNV
BNNAATTATTGS		 SELEX
Mathelier et al.(2014)
MA0008.2 		0.813 0.732
HAT5
M10624_2.00 		Arabidopsis thaliana
YSCAATAATTNNVN
NBNNAATTATTGSR		 Transfac
Matys et al.(2006)
P$ATHB1_01 		0.813 0.732
ATHB-16
M02050_2.00 		Arabidopsis thaliana
YAATMATT
AATKATTR		 PBM
Weirauch et al.(2014)
pTH7270 		0.809 0.750
ATHB-6
M02040_2.00 		Arabidopsis thaliana
HATNATTDN
NHAATNATD		 PBM
Weirauch et al.(2014)
pTH7670 		0.809 0.732
ATHB-6
M06909_2.00 		Arabidopsis thaliana
NNNHATKATTR
YAATMATDNNN		 Dap-seq
OMalley et al.(2016)
ATHB6_col_a 		0.809 0.732
ATHB-6
M06910_2.00 		Arabidopsis thaliana
NCAATAATTRN
NYAATTATTGN		 Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a 		0.809 0.732
ATHB-5
M06932_2.00 		Arabidopsis thaliana
NYAATMATTND
HNAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_col_a 		0.791 0.732
ATHB-5
M06933_2.00 		Arabidopsis thaliana
NYAATMATTN
NAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a 		0.791 0.732
ATHB-5
M02684_2.00 		Arabidopsis thaliana
CAATVATTGVVSV
BSBBCAATBATTG		 SELEX
Mathelier et al.(2014)
MA0110.2 		0.791 0.732
ATHB-5
M10630_2.00 		Arabidopsis thaliana
CAATVATTG
CAATBATTG		 Transfac
Matys et al.(2006)
P$ATHB5_01 		0.791 0.732
ATHB-53
M06934_2.00 		Arabidopsis thaliana
HMAATAATTRD
HYAATTATTKD		 Dap-seq
OMalley et al.(2016)
ATHB53_col_a 		0.754 0.589
ATHB-53
M06935_2.00 		Arabidopsis thaliana
NNWHCAATWATTDDN
NHHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB53_colamp_a 		0.754 0.589
ATHB-21
M06907_2.00 		Arabidopsis thaliana
NNWHCAATWATTDN
NHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB21_col_a 		0.751 0.643
ATHB-21
M06908_2.00 		Arabidopsis thaliana
WWDDNNNHAATWATTGDTNN
NNAHCAATWATTDNNNHHWW		 Dap-seq
OMalley et al.(2016)
ATHB21_colamp_a 		0.751 0.643
HB-5
M06924_2.00 		Arabidopsis thaliana
NNAHCAATWATTKDNNNHWWH
DWWDNNNHMAATWATTGDTNN		 Dap-seq
OMalley et al.(2016)
ATHB40_col_a 		0.749 0.589
HB-5
M06925_2.00 		Arabidopsis thaliana
HHAATWATTGDWNN
NNWHCAATWATTDD		 Dap-seq
OMalley et al.(2016)
ATHB40_colamp_a 		0.749 0.589
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.684 0.679
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.684 0.679
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.664 0.661
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.664 0.661
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia04906.1.p Homeodomain 65 120

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

802 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL004707 Aedes aegypti AAEL004707 I
Aan_R007509 Calypte anna Aan_R007509 I
AARA001840 Anopheles arabiensis AARA001840 I
AATE006277 Anopheles atroparvus AATE006277 I
ACHR001525 Anopheles christyi ACHR001525 I
ACOC_0000843601 Angiostrongylus costaricensis ACOC_0000843601 I
ACOM034050 Anopheles coluzzii ACOM034050 I
ACUA024331 Anopheles culicifacies ACUA024331 I
ADIR002846 Anopheles dirus ADIR002846 I
AEPI001110 Anopheles epiroticus AEPI001110 I
AFAF018650 Anopheles farauti AFAF018650 I
Afo_R002655 Aptenodytes forsteri Afo_R002655 I
AFUN007808 Anopheles funestus AFUN007808 I
AGAP001389 Anopheles gambiae AGAP001389 I
Alligator_sinensis_CCG013675.1 Alligator sinensis Alligator_sinensis_CCG013675.1 I
AMAM015319 Anopheles maculatus AMAM015319 I
AMEC012825 Anopheles melas AMEC012825 I
AMEM017315 Anopheles merus AMEM017315 I
AMIN000568 Anopheles minimus AMIN000568 I
AQUA006568 Anopheles quadriannulatus AQUA006568 I
ASIM_0001155801 Anisakis simplex ASIM_0001155801 I
ASIS014034 Anopheles sinensis ASIS014034 I
ASTEI07538 Anopheles stephensi ASTEI07538 I
ASU_02199 Ascaris suum ASU_02199 I
augustus_masked-nMf.1.1.scaf09384-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf09384-processed-gene-0.0 I
BGIBMGA010054 Bombyx mori BGIBMGA010054 I
Bm5107 Brugia malayi Bm5107 I
Brh_R009926 Buceros rhinoceros Brh_R009926 I
BTMF_0001400701 Brugia timori BTMF_0001400701 I
BXY_0632900 Bursaphelenchus xylophilus BXY_0632900 I
CABZ01079847.1 Danio rerio ENSDARG00000098231 I
CapteG110019 Capitella teleta CapteG110019 I
CapteG129537 Capitella teleta CapteG129537 I
CBG08137 Caenorhabditis briggsae CBG08137 I
CBN29205 Caenorhabditis brenneri CBN29205 I
CGI_10025054 Crassostrea gigas CGI_10025054 I
Cmyd_10016939 Chelonia mydas Cmyd_10016939 I
CPIJ003318 Culex quinquefasciatus CPIJ003318 I
CpipJ_CPIJ003318 Culex pipiens CpipJ_CPIJ003318 I
CRE17126 Caenorhabditis remanei CRE17126 I
DAPPUDRAFT_229438 Daphnia pulex DAPPUDRAFT_229438 I
DME_0000899101 Dracunculus medinensis DME_0000899101 I
ENSAMEG00000014091 Ailuropoda melanoleuca ENSAMEG00000014091 I
ENSAMXG00000011188 Astyanax mexicanus ENSAMXG00000011188 I
ENSAPLG00000004046 Anas platyrhynchos ENSAPLG00000004046 I
ENSBTAP00000018899-D1 Bos grunniens ENSBTAP00000018899-D1 I
ENSCPOG00000021993 Cavia porcellus ENSCPOG00000021993 I
ENSCSAG00000006543 Chlorocebus sabaeus ENSCSAG00000006543 I
ENSCSAVG00000001801 Ciona savignyi ENSCSAVG00000001801 I
ENSEEUG00000003019 Erinaceus europaeus ENSEEUG00000003019 N
ENSFALG00000007921 Ficedula albicollis ENSFALG00000007921 I
ENSGALG00000029169 Gallus gallus ENSGALG00000029169 I
ENSGGOG00000026464 Gorilla gorilla ENSGGOG00000026464 I
ENSGMOG00000011697 Gadus morhua ENSGMOG00000011697 I
ENSLACG00000009588 Latimeria chalumnae ENSLACG00000009588 I
ENSLACG00000014170 Latimeria chalumnae ENSLACG00000014170 I
ENSLAFG00000005359 Loxodonta africana ENSLAFG00000005359 I
ENSLOCG00000007051 Lepisosteus oculatus ENSLOCG00000007051 I
ENSMEUG00000004291 Macropus eugenii ENSMEUG00000004291 I
ENSMGAG00000009052 Meleagris gallopavo ENSMGAG00000009052 I
ENSMICG00000014969 Microcebus murinus ENSMICG00000014969 N
ENSMLUG00000013333 Myotis lucifugus ENSMLUG00000013333 I
ENSMLUG00000024763 Myotis lucifugus ENSMLUG00000024763 I
ENSMPUG00000017219 Mustela putorius furo ENSMPUG00000017219 I
ENSONIG00000007247 Oreochromis niloticus ENSONIG00000007247 I
ENSP00000282728 Macaca fascicularis ENSP00000282728 I
ENSPANG00000021555 Papio anubis ENSPANG00000021555 I
ENSPFOG00000009869 Poecilia formosa ENSPFOG00000009869 I
ENSPMAG00000009445 Petromyzon marinus ENSPMAG00000009445 I
ENSPPYG00000002486 Pongo abelii ENSPPYG00000002486 I
ENSPSIG00000015884 Pelodiscus sinensis ENSPSIG00000015884 I
ENSSHAG00000018185 Sarcophilus harrisii ENSSHAG00000018185 I
ENSSSCG00000010472 Sus scrofa ENSSSCG00000010472 I
ENSSTOG00000006255 Ictidomys tridecemlineatus ENSSTOG00000006255 I
ENSTBEG00000001339 Tupaia belangeri ENSTBEG00000001339 I
ENSTGUG00000008924 Taeniopygia guttata ENSTGUG00000008924 I
ENSTGUG00000013882 Taeniopygia guttata ENSTGUG00000013882 I
e_gw.54.243.1 Branchiostoma floridae e_gw.54.243.1 I
e_gw.56.215.1 Branchiostoma floridae e_gw.56.215.1 I
GA20065 Drosophila pseudoobscura FBgn0080061 I
GD20010 Drosophila simulans FBgn0191493 I
GF18520 Drosophila ananassae FBgn0095538 I
Gfo_R002376 Geospiza fortis Gfo_R002376 I
GG14915 Drosophila erecta FBgn0107169 I
GH19308 Drosophila grimshawi FBgn0126773 I
GI23524 Drosophila mojavensis FBgn0146250 I
GJ10276 Drosophila virilis FBgn0197562 I
GK13080 Drosophila willistoni FBgn0215089 I
GL12681 Drosophila persimilis FBgn0150287 I
GM15106 Drosophila sechellia FBgn0170026 I
GPLIN_000004000 Globodera pallida GPLIN_000004000 I
HCOI01904700 Haemonchus contortus HCOI01904700 I
HelroG80789 Helobdella robusta HelroG80789 I
hex Ciona intestinalis ENSCING00000001270 I
HHEX Anolis carolinensis ENSACAG00000006660 I
HHEX Bos taurus ENSBTAG00000014217 I
HHEX Canis familiaris ENSCAFG00000007502 I
HHEX Choloepus hoffmanni ENSCHOG00000005837 I
HHEX Callithrix jacchus ENSCJAG00000008627 I
HHEX Dasypus novemcinctus ENSDNOG00000041940 I
HHEX Equus caballus ENSECAG00000005199 I
HHEX Echinops telfairi ENSETEG00000009524 N
HHEX Felis catus ENSFCAG00000023875 I
HHEX Homo sapiens ENSG00000152804 I
HHEX Gasterosteus aculeatus ENSGACG00000015385 I
HHEX Macaca mulatta ENSMMUG00000011789 I
HHEX Monodelphis domestica ENSMODG00000006444 I
Hhex Mus musculus ENSMUSG00000024986 I
HHEX Oryctolagus cuniculus ENSOCUG00000016719 I
HHEX Otolemur garnettii ENSOGAG00000015201 I
HHEX Ochotona princeps ENSOPRG00000003896 I
HHEX Pan troglodytes ENSPTRG00000002760 I
HHEX Pteropus vampyrus ENSPVAG00000007094 I
Hhex Rattus norvegicus ENSRNOG00000016595 I
HHEX Tetraodon nigroviridis ENSTNIG00000005879 I
HHEX Takifugu rubripes ENSTRUG00000004234 I
HHEX Tursiops truncatus ENSTTRG00000012365 I
HHEX Vicugna pacos ENSVPAG00000009916 I
HHEX Drosophila melanogaster FBgn0038852 D
hhex Xenopus tropicalis XB-GENE-487159 I
hhex.L Xenopus laevis XB-GENE-865680 I
HMEL004646 Heliconius melpomene HMEL004646 I
HPLM_0000551901 Haemonchus placei HPLM_0000551901 I
KGM_13906 Danaus plexippus KGM_13906 I
L596_g25649 Steinernema carpocapsae L596_g25649 I
L798_02156 Zootermopsis nevadensis L798_02156 I
L889_g29725 Steinernema feltiae L889_g29725 I
L892_g7017 Steinernema scapterisci L892_g7017 I
L898_g1404 Steinernema monticolum L898_g1404 I
LCUP007736 Lucilia cuprina LCUP007736 I
LLOJ007496 Lutzomyia longipalpis LLOJ007496 I
LOAG_11830 Loa loa LOAG_11830 I
LotgiG128951 Lottia gigantea LotgiG128951 I
MESCA008304 Megaselia scalaris MESCA008304 I
MhA1_Contig193.frz3.gene1 Meloidogyne hapla MhA1_Contig193.frz3.gene1 I
Myotis_brandtii_KIF11_10018005 Myotis brandtii Myotis_brandtii_KIF11_10018005 I
nAv.1.0.1.g00022 Acanthocheilonema viteae nAv.1.0.1.g00022 I
NBR_0000887601 Nippostrongylus brasiliensis NBR_0000887601 I
nDi.2.2.2.g05290 Dirofilaria immitis nDi.2.2.2.g05290 I
NEMVEDRAFT_v1g39891 Nematostella vectensis NEMVEDRAFT_v1g39891 I
nLs.2.1.2.g00270 Litomosoides sigmodontis nLs.2.1.2.g00270 I
nOo.2.0.1.g09114 Onchocerca ochengi nOo.2.0.1.g09114 I
nRc.2.0.1.g06585 Romanomermis culicivorax nRc.2.0.1.g06585 I
OFLC_0000354301 Onchocerca flexuosa OFLC_0000354301 I
Ogr00908 Ophisaurus gracilis Ogr00908 I
pha-2 Caenorhabditis elegans WBGene00004011 D
PTRK_0000720600 Parastrongyloides trichosuri PTRK_0000720600 I
Pvit_14369 Pogona vitticeps Pvit_14369 I
RSKR_0000094800 Rhabditophanes kr3021 RSKR_0000094800 I
Sakowv30040087m.g Saccoglossus kowalevskii Sakowv30040087m.g I
scaffold24-EXSNAP2012.65 Pristionchus exspectatus scaffold24-EXSNAP2012.65 I
SMAR000779 Strigamia maritima SMAR000779 I
SPAL_0000841600 Strongyloides papillosus SPAL_0000841600 I
SPU_027215 Strongylocentrotus purpuratus SPU_027215 I
SSTP_0000145800 Strongyloides stercoralis SSTP_0000145800 I
SVE_1799000 Strongyloides venezuelensis SVE_1799000 I
Tal_R011621 Tyto alba Tal_R011621 I
TC004555 Tribolium castaneum TC004555 I
TCLT_0000379201 Thelazia callipaeda TCLT_0000379201 I
TELCIR_00798 Teladorsagia circumcincta TELCIR_00798 I
tetur29g00560 Tetranychus urticae tetur29g00560 I
TriadG9560 Trichoplax adhaerens TriadG9560 I
WBGene00240685 Onchocerca volvulus WBGene00240685 I
WUBG_10995 Wuchereria bancrofti WUBG_10995 I