Alligator_sinensis_CCG013675.1 (Alligator sinensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Alligator_sinensis_CCG013675.1 T225239_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
pha-2
M02184_2.00 		Caenorhabditis elegans
NNNATNDNNN
NNNHNATNNN		 PBM
Weirauch et al.(2014)
pTH6423 		0.708 0.772
HHEX
M06541_2.00 		Drosophila melanogaster
WYBAATWA
TWATTVRW		 B1H
Mathelier et al.(2014)
MA0183.1 		0.683 0.667
HHEX
M06358_2.00 		Drosophila melanogaster
WYBAATWA
TWATTVRW		 B1H
Zhu et al.(2011)
CG7056_Cell_FBgn0038852 		0.683 0.667
HHEX
M06359_2.00 		Drosophila melanogaster
NYBAATWR
YWATTVRN		 B1H
Zhu et al.(2011)
CG7056_SOLEXA_FBgn0038852 		0.683 0.667
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG013675.1 Homeodomain 119 175

Links

Other Homeodomain family TFs
Other Alligator sinensis TFs

164 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000014091 Ailuropoda melanoleuca ENSAMEG00000014091 I 0.867
ENSAMXG00000011188 Astyanax mexicanus ENSAMXG00000011188 I 0.867
ENSAPLG00000004046 Anas platyrhynchos ENSAPLG00000004046 I 0.867
HHEX Bos taurus ENSBTAG00000014217 I 0.867
HHEX Canis familiaris ENSCAFG00000007502 I 0.867
HHEX Choloepus hoffmanni ENSCHOG00000005837 I 0.867
HHEX Callithrix jacchus ENSCJAG00000008627 I 0.867
ENSCPOG00000021993 Cavia porcellus ENSCPOG00000021993 I 0.867
ENSCSAG00000006543 Chlorocebus sabaeus ENSCSAG00000006543 I 0.867
HHEX Dasypus novemcinctus ENSDNOG00000041940 I 0.867
HHEX Equus caballus ENSECAG00000005199 I 0.867
ENSFALG00000007921 Ficedula albicollis ENSFALG00000007921 I 0.867
HHEX Felis catus ENSFCAG00000023875 I 0.867
HHEX Homo sapiens ENSG00000152804 I 0.867
HHEX Gasterosteus aculeatus ENSGACG00000015385 I 0.867
ENSGGOG00000026464 Gorilla gorilla ENSGGOG00000026464 I 0.867
ENSGGOG00000027676 Gorilla gorilla ENSGGOG00000027676 I 0.867
ENSGMOG00000011697 Gadus morhua ENSGMOG00000011697 I 0.867
ENSLACG00000014170 Latimeria chalumnae ENSLACG00000014170 I 0.867
ENSLAFG00000005359 Loxodonta africana ENSLAFG00000005359 I 0.867
ENSLOCG00000007051 Lepisosteus oculatus ENSLOCG00000007051 I 0.867
ENSMEUG00000004291 Macropus eugenii ENSMEUG00000004291 I 0.867
ENSMLUG00000013333 Myotis lucifugus ENSMLUG00000013333 I 0.867
ENSMLUG00000024763 Myotis lucifugus ENSMLUG00000024763 I 0.867
HHEX Macaca mulatta ENSMMUG00000011789 I 0.867
HHEX Monodelphis domestica ENSMODG00000006444 I 0.867
ENSMPUG00000017219 Mustela putorius furo ENSMPUG00000017219 I 0.867
HHEX Oryctolagus cuniculus ENSOCUG00000016719 I 0.867
HHEX Otolemur garnettii ENSOGAG00000015201 I 0.867
ENSONIG00000007247 Oreochromis niloticus ENSONIG00000007247 I 0.867
HHEX Ochotona princeps ENSOPRG00000003896 I 0.867
ENSPANG00000021555 Papio anubis ENSPANG00000021555 I 0.867
ENSPPYG00000002486 Pongo abelii ENSPPYG00000002486 I 0.867
ENSPSIG00000015884 Pelodiscus sinensis ENSPSIG00000015884 I 0.867
HHEX Pan troglodytes ENSPTRG00000002760 I 0.867
HHEX Pteropus vampyrus ENSPVAG00000007094 I 0.867
Hhex Rattus norvegicus ENSRNOG00000016595 I 0.867
ENSSHAG00000018185 Sarcophilus harrisii ENSSHAG00000018185 I 0.867
ENSSSCG00000010472 Sus scrofa ENSSSCG00000010472 I 0.867
ENSSTOG00000006255 Ictidomys tridecemlineatus ENSSTOG00000006255 I 0.867
ENSTBEG00000001339 Tupaia belangeri ENSTBEG00000001339 I 0.867
ENSTGUG00000008924 Taeniopygia guttata ENSTGUG00000008924 I 0.867
ENSTGUG00000013882 Taeniopygia guttata ENSTGUG00000013882 I 0.867
HHEX Tursiops truncatus ENSTTRG00000012365 I 0.867
HHEX Vicugna pacos ENSVPAG00000009916 I 0.867
Afo_R002655 Aptenodytes forsteri Afo_R002655 I 0.867
Cmyd_10016939 Chelonia mydas Cmyd_10016939 I 0.867
ENSBTAP00000018899-D1 Bos grunniens ENSBTAP00000018899-D1 I 0.867
ENSP00000282728 Macaca fascicularis ENSP00000282728 I 0.867
Myotis_brandtii_KIF11_10018005 Myotis brandtii Myotis_brandtii_KIF11_10018005 I 0.867
Ogr00908 Ophisaurus gracilis Ogr00908 I 0.867
hhex Xenopus tropicalis XB-GENE-487159 I 0.867
hhex.L Xenopus laevis XB-GENE-865680 I 0.867
HHEX Anolis carolinensis ENSACAG00000006660 I 0.865
Hhex Mus musculus ENSMUSG00000024986 I 0.865
ENSPFOG00000009869 Poecilia formosa ENSPFOG00000009869 I 0.865
Pvit_14369 Pogona vitticeps Pvit_14369 I 0.865
ENSGALG00000029169 Gallus gallus ENSGALG00000029169 I 0.855
ENSMGAG00000009052 Meleagris gallopavo ENSMGAG00000009052 I 0.855
HHEX Tetraodon nigroviridis ENSTNIG00000005879 I 0.855
HHEX Takifugu rubripes ENSTRUG00000004234 I 0.855
NEMVEDRAFT_v1g39891 Nematostella vectensis NEMVEDRAFT_v1g39891 I 0.850
CGI_10025054 Crassostrea gigas CGI_10025054 I 0.849
SPU_027215 Strongylocentrotus purpuratus SPU_027215 I 0.849
e_gw.54.243.1 Branchiostoma floridae e_gw.54.243.1 I 0.849
e_gw.56.215.1 Branchiostoma floridae e_gw.56.215.1 I 0.849
Sakowv30040087m.g Saccoglossus kowalevskii Sakowv30040087m.g I 0.849
hex Ciona intestinalis ENSCING00000001270 I 0.848
ENSCSAVG00000001801 Ciona savignyi ENSCSAVG00000001801 I 0.848
LotgiG128951 Lottia gigantea LotgiG128951 I 0.847
ENSPMAG00000009445 Petromyzon marinus ENSPMAG00000009445 I 0.845
SMAR000779 Strigamia maritima SMAR000779 I 0.842
CpipJ_CPIJ003318 Culex pipiens CpipJ_CPIJ003318 I 0.822
AAEL004707 Aedes aegypti AAEL004707 I 0.822
AGAP001389 Anopheles gambiae AGAP001389 I 0.822
BGIBMGA010054 Bombyx mori BGIBMGA010054 I 0.822
CPIJ003318 Culex quinquefasciatus CPIJ003318 I 0.822
HMEL004646 Heliconius melpomene HMEL004646 I 0.822
KGM_13906 Danaus plexippus KGM_13906 I 0.822
L798_02156 Zootermopsis nevadensis L798_02156 I 0.822
TC004555 Tribolium castaneum TC004555 I 0.822
AARA001840 Anopheles arabiensis AARA001840 I 0.822
AATE006277 Anopheles atroparvus AATE006277 I 0.822
ACHR001525 Anopheles christyi ACHR001525 I 0.822
ACOM034050 Anopheles coluzzii ACOM034050 I 0.822
ACUA024331 Anopheles culicifacies ACUA024331 I 0.822
ADIR002846 Anopheles dirus ADIR002846 I 0.822
AEPI001110 Anopheles epiroticus AEPI001110 I 0.822
AFAF018650 Anopheles farauti AFAF018650 I 0.822
AFUN007808 Anopheles funestus AFUN007808 I 0.822
AMAM015319 Anopheles maculatus AMAM015319 I 0.822
AMEC012825 Anopheles melas AMEC012825 I 0.822
AMEM017315 Anopheles merus AMEM017315 I 0.822
AMIN000568 Anopheles minimus AMIN000568 I 0.822
AQUA006568 Anopheles quadriannulatus AQUA006568 I 0.822
ASIS014034 Anopheles sinensis ASIS014034 I 0.822
ASTEI07538 Anopheles stephensi ASTEI07538 I 0.822
LLOJ007496 Lutzomyia longipalpis LLOJ007496 I 0.822
ENSLACG00000009588 Latimeria chalumnae ENSLACG00000009588 I 0.820
CapteG110019 Capitella teleta CapteG110019 I 0.803
CapteG129537 Capitella teleta CapteG129537 I 0.803
ASU_02199 Ascaris suum ASU_02199 I 0.712
L596_g25649 Steinernema carpocapsae L596_g25649 I 0.710
L889_g29725 Steinernema feltiae L889_g29725 I 0.710
L892_g7017 Steinernema scapterisci L892_g7017 I 0.710
L898_g1404 Steinernema monticolum L898_g1404 I 0.710
CBG08137 Caenorhabditis briggsae CBG08137 I 0.708
CBN29205 Caenorhabditis brenneri CBN29205 I 0.708
CRE17126 Caenorhabditis remanei CRE17126 I 0.708
pha-2 Caenorhabditis elegans WBGene00004011 D 0.708
ACOC_0000843601 Angiostrongylus costaricensis ACOC_0000843601 I 0.708
HCOI01904700 Haemonchus contortus HCOI01904700 I 0.708
HPLM_0000551901 Haemonchus placei HPLM_0000551901 I 0.708
NBR_0000887601 Nippostrongylus brasiliensis NBR_0000887601 I 0.708
PTRK_0000720600 Parastrongyloides trichosuri PTRK_0000720600 I 0.708
SPAL_0000841600 Strongyloides papillosus SPAL_0000841600 I 0.708
SSTP_0000145800 Strongyloides stercoralis SSTP_0000145800 I 0.708
SVE_1799000 Strongyloides venezuelensis SVE_1799000 I 0.708
TELCIR_00798 Teladorsagia circumcincta TELCIR_00798 I 0.708
TriadG9560 Trichoplax adhaerens TriadG9560 I 0.703
nRc.2.0.1.g06585 Romanomermis culicivorax nRc.2.0.1.g06585 I 0.703
GPLIN_000004000 Globodera pallida GPLIN_000004000 I 0.702
WUBG_10995 Wuchereria bancrofti WUBG_10995 I 0.700
Bm5107 Brugia malayi Bm5107 I 0.700
LOAG_11830 Loa loa LOAG_11830 I 0.700
WBGene00240685 Onchocerca volvulus WBGene00240685 I 0.700
BTMF_0001400701 Brugia timori BTMF_0001400701 I 0.700
BXY_0632900 Bursaphelenchus xylophilus BXY_0632900 I 0.700
DME_0000899101 Dracunculus medinensis DME_0000899101 I 0.700
nAv.1.0.1.g00022 Acanthocheilonema viteae nAv.1.0.1.g00022 I 0.700
nDi.2.2.2.g05290 Dirofilaria immitis nDi.2.2.2.g05290 I 0.700
nLs.2.1.2.g00270 Litomosoides sigmodontis nLs.2.1.2.g00270 I 0.700
nOo.2.0.1.g09114 Onchocerca ochengi nOo.2.0.1.g09114 I 0.700
OFLC_0000354301 Onchocerca flexuosa OFLC_0000354301 I 0.700
MhA1_Contig193.frz3.gene1 Meloidogyne hapla MhA1_Contig193.frz3.gene1 I 0.694
TCLT_0000379201 Thelazia callipaeda TCLT_0000379201 I 0.694
ASIM_0001155801 Anisakis simplex ASIM_0001155801 I 0.692
RSKR_0000094800 Rhabditophanes kr3021 RSKR_0000094800 I 0.687
HHEX Drosophila melanogaster FBgn0038852 D 0.683
GA20065 Drosophila pseudoobscura FBgn0080061 I 0.683
GF18520 Drosophila ananassae FBgn0095538 I 0.683
GG14915 Drosophila erecta FBgn0107169 I 0.683
GH19308 Drosophila grimshawi FBgn0126773 I 0.683
GI23524 Drosophila mojavensis FBgn0146250 I 0.683
GL12681 Drosophila persimilis FBgn0150287 I 0.683
GM15106 Drosophila sechellia FBgn0170026 I 0.683
GD20010 Drosophila simulans FBgn0191493 I 0.683
GJ10276 Drosophila virilis FBgn0197562 I 0.683
GK13080 Drosophila willistoni FBgn0215089 I 0.683
MESCA008304 Megaselia scalaris MESCA008304 I 0.683
LCUP007736 Lucilia cuprina LCUP007736 I 0.683
tetur29g00560 Tetranychus urticae tetur29g00560 I 0.673
augustus_masked-nMf.1.1.scaf09384-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf09384-processed-gene-0.0 I 0.671
scaffold24-EXSNAP2012.65 Pristionchus exspectatus scaffold24-EXSNAP2012.65 I 0.661
HelroG80789 Helobdella robusta HelroG80789 I 0.656
DAPPUDRAFT_229438 Daphnia pulex DAPPUDRAFT_229438 I 0.654
CABZ01079847.1 Danio rerio ENSDARG00000098231 I 0.634
Aan_R007509 Calypte anna Aan_R007509 I 0.387
Brh_R009926 Buceros rhinoceros Brh_R009926 I 0.387
Gfo_R002376 Geospiza fortis Gfo_R002376 I 0.387
Tal_R011621 Tyto alba Tal_R011621 I 0.387
ENSEEUG00000003019 Erinaceus europaeus ENSEEUG00000003019 N 0.326
HHEX Echinops telfairi ENSETEG00000009524 N 0.326
ENSMICG00000014969 Microcebus murinus ENSMICG00000014969 N 0.306