Pavir.J39801 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.J39801 T229377_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-13
M06900_2.00 		Arabidopsis thaliana
HYAATAATTDD
HHAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB13_col_a 		0.797 0.607
ATHB-13
M06901_2.00 		Arabidopsis thaliana
NYAATAATTRW
WYAATTATTRN		 Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a 		0.797 0.607
estExt_gwp_gw1.C_70211
M02220_2.00 		Physcomitrella patens
HMATNANDNN
NNHNTNATKD		 PBM
Weirauch et al.(2014)
pTH8489 		0.792 0.643
ATHB-5
M06932_2.00 		Arabidopsis thaliana
NYAATMATTND
HNAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_col_a 		0.777 0.625
ATHB-5
M06933_2.00 		Arabidopsis thaliana
NYAATMATTN
NAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a 		0.777 0.625
ATHB-5
M02684_2.00 		Arabidopsis thaliana
CAATVATTGVVSV
BSBBCAATBATTG		 SELEX
Mathelier et al.(2014)
MA0110.2 		0.777 0.625
ATHB-5
M10630_2.00 		Arabidopsis thaliana
CAATVATTG
CAATBATTG		 Transfac
Matys et al.(2006)
P$ATHB5_01 		0.777 0.625
ATHB-6
M02040_2.00 		Arabidopsis thaliana
HATNATTDN
NHAATNATD		 PBM
Weirauch et al.(2014)
pTH7670 		0.759 0.589
ATHB-16
M02050_2.00 		Arabidopsis thaliana
YAATMATT
AATKATTR		 PBM
Weirauch et al.(2014)
pTH7270 		0.759 0.589
ATHB-6
M06909_2.00 		Arabidopsis thaliana
NNNHATKATTR
YAATMATDNNN		 Dap-seq
OMalley et al.(2016)
ATHB6_col_a 		0.759 0.589
ATHB-6
M06910_2.00 		Arabidopsis thaliana
NCAATAATTRN
NYAATTATTGN		 Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a 		0.759 0.589
HAT5
M06914_2.00 		Arabidopsis thaliana
NHAATAATTDW
WHAATTATTDN		 Dap-seq
OMalley et al.(2016)
HAT5_col_a 		0.747 0.607
HAT5
M06915_2.00 		Arabidopsis thaliana
WNYAATAATTRWDN
NHWYAATTATTRNW		 Dap-seq
OMalley et al.(2016)
HAT5_colamp_a 		0.747 0.607
HAT5
M02683_2.00 		Arabidopsis thaliana
SCAATAATTNNV
BNNAATTATTGS		 SELEX
Mathelier et al.(2014)
MA0008.2 		0.747 0.607
HAT5
M10624_2.00 		Arabidopsis thaliana
YSCAATAATTNNVN
NBNNAATTATTGSR		 Transfac
Matys et al.(2006)
P$ATHB1_01 		0.747 0.607
ATHB-21
M06907_2.00 		Arabidopsis thaliana
NNWHCAATWATTDN
NHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB21_col_a 		0.745 0.571
ATHB-21
M06908_2.00 		Arabidopsis thaliana
WWDDNNNHAATWATTGDTNN
NNAHCAATWATTDNNNHHWW		 Dap-seq
OMalley et al.(2016)
ATHB21_colamp_a 		0.745 0.571
HB-5
M06924_2.00 		Arabidopsis thaliana
NNAHCAATWATTKDNNNHWWH
DWWDNNNHMAATWATTGDTNN		 Dap-seq
OMalley et al.(2016)
ATHB40_col_a 		0.744 0.571
HB-5
M06925_2.00 		Arabidopsis thaliana
HHAATWATTGDWNN
NNWHCAATWATTDD		 Dap-seq
OMalley et al.(2016)
ATHB40_colamp_a 		0.744 0.571
ATHB-53
M06934_2.00 		Arabidopsis thaliana
HMAATAATTRD
HYAATTATTKD		 Dap-seq
OMalley et al.(2016)
ATHB53_col_a 		0.739 0.554
ATHB-53
M06935_2.00 		Arabidopsis thaliana
NNWHCAATWATTDDN
NHHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB53_colamp_a 		0.739 0.554
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.658 0.589
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.658 0.589
ATHB-7
M02043_2.00 		Arabidopsis thaliana
NHWTGATTGN
NCAATCAWDN		 PBM
Weirauch et al.(2014)
pTH8090 		0.641 0.661
ATHB-7
M06911_2.00 		Arabidopsis thaliana
NHYCAATCATTSW
WSAATGATTGRDN		 Dap-seq
OMalley et al.(2016)
ATHB7_col_a 		0.641 0.661
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.638 0.554
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.638 0.554
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J39801.1.p Homeodomain 47 103

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

815 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R009606 Calypte anna Aan_R009606 I
Afo_R005555 Aptenodytes forsteri Afo_R005555 I
Alligator_sinensis_CCG009102.1 Alligator sinensis Alligator_sinensis_CCG009102.1 I
Alligator_sinensis_CCG011017.1 Alligator sinensis Alligator_sinensis_CCG011017.1 I
Aqu1.218726 Amphimedon queenslandica Aqu1.218726 I
Brh_R005579 Buceros rhinoceros Brh_R005579 I
Brh_R011837 Buceros rhinoceros Brh_R011837 I
CapteG182542 Capitella teleta CapteG182542 I
CapteG228069 Capitella teleta CapteG228069 I
CGI_10018323 Crassostrea gigas CGI_10018323 I
CLEC011631 Cimex lectularius CLEC011631 N
Cmyd_10005434 Chelonia mydas Cmyd_10005434 I
Cmyd_10006677 Chelonia mydas Cmyd_10006677 I
DAPPUDRAFT_347250 Daphnia pulex DAPPUDRAFT_347250 N
ENSAMEG00000009592 Ailuropoda melanoleuca ENSAMEG00000009592 I
ENSAMEG00000011612 Ailuropoda melanoleuca ENSAMEG00000011612 I
ENSAMEG00000017517 Ailuropoda melanoleuca ENSAMEG00000017517 I
ENSAMXG00000011148 Astyanax mexicanus ENSAMXG00000011148 N
ENSAMXG00000011237 Astyanax mexicanus ENSAMXG00000011237 I
ENSAMXG00000018013 Astyanax mexicanus ENSAMXG00000018013 I
ENSAPLG00000003195 Anas platyrhynchos ENSAPLG00000003195 I
ENSAPLG00000007121 Anas platyrhynchos ENSAPLG00000007121 I
ENSCAFG00000032212 Canis familiaris ENSCAFG00000032212 I
ENSCPOG00000000704 Cavia porcellus ENSCPOG00000000704 I
ENSCSAG00000001134 Chlorocebus sabaeus ENSCSAG00000001134 I
ENSCSAG00000013410 Chlorocebus sabaeus ENSCSAG00000013410 I
ENSCSAG00000016312 Chlorocebus sabaeus ENSCSAG00000016312 I
ENSDORG00000009001 Dipodomys ordii ENSDORG00000009001 I
ENSFALG00000000542 Ficedula albicollis ENSFALG00000000542 I
ENSFALG00000008605 Ficedula albicollis ENSFALG00000008605 I
ENSFALG00000011461 Ficedula albicollis ENSFALG00000011461 I
ENSGALG00000021593 Gallus gallus ENSGALG00000021593 I
ENSGMOG00000011084 Gadus morhua ENSGMOG00000011084 I
ENSGMOG00000013488 Gadus morhua ENSGMOG00000013488 I
ENSGMOG00000017811 Gadus morhua ENSGMOG00000017811 I
ENSLACG00000006098 Latimeria chalumnae ENSLACG00000006098 I
ENSLACG00000012215 Latimeria chalumnae ENSLACG00000012215 I
ENSLACG00000015540 Latimeria chalumnae ENSLACG00000015540 I
ENSLOCG00000001853 Lepisosteus oculatus ENSLOCG00000001853 I
ENSLOCG00000004692 Lepisosteus oculatus ENSLOCG00000004692 I
ENSLOCG00000017268 Lepisosteus oculatus ENSLOCG00000017268 I
ENSMEUG00000007444 Macropus eugenii ENSMEUG00000007444 I
ENSMEUG00000009781 Macropus eugenii ENSMEUG00000009781 I
ENSMPUG00000001859 Mustela putorius furo ENSMPUG00000001859 I
ENSMPUG00000014412 Mustela putorius furo ENSMPUG00000014412 I
ENSMPUG00000014531 Mustela putorius furo ENSMPUG00000014531 I
ENSNLEG00000002239 Nomascus leucogenys ENSNLEG00000002239 I
ENSNLEG00000013972 Nomascus leucogenys ENSNLEG00000013972 I
ENSOANG00000022119 Ornithorhynchus anatinus ENSOANG00000022119 I
ENSOARG00000007915 Ovis aries ENSOARG00000007915 I
ENSOARG00000008063 Ovis aries ENSOARG00000008063 I
ENSOARG00000020088 Ovis aries ENSOARG00000020088 I
ENSONIG00000002623 Oreochromis niloticus ENSONIG00000002623 I
ENSONIG00000003087 Oreochromis niloticus ENSONIG00000003087 I
ENSONIG00000004726 Oreochromis niloticus ENSONIG00000004726 I
ENSP00000338272 Macaca fascicularis ENSP00000338272 I
ENSP00000338272-D1 Bos grunniens ENSP00000338272-D1 I
ENSP00000357348 Macaca fascicularis ENSP00000357348 I
ENSP00000357348-D1 Bos grunniens ENSP00000357348-D1 I
ENSP00000361943 Macaca fascicularis ENSP00000361943 I
ENSP00000361943-D1 Bos grunniens ENSP00000361943-D1 I
ENSPANG00000006227 Papio anubis ENSPANG00000006227 I
ENSPANG00000018687 Papio anubis ENSPANG00000018687 I
ENSPFOG00000001913 Poecilia formosa ENSPFOG00000001913 I
ENSPFOG00000014160 Poecilia formosa ENSPFOG00000014160 I
ENSPFOG00000015536 Poecilia formosa ENSPFOG00000015536 I
ENSPPYG00000001505 Pongo abelii ENSPPYG00000001505 I
ENSPPYG00000016987 Pongo abelii ENSPPYG00000016987 I
ENSPPYG00000018693 Pongo abelii ENSPPYG00000018693 I
ENSPSIG00000003791 Pelodiscus sinensis ENSPSIG00000003791 I
ENSPSIG00000012495 Pelodiscus sinensis ENSPSIG00000012495 I
ENSSHAG00000016487 Sarcophilus harrisii ENSSHAG00000016487 I
ENSSHAG00000017958 Sarcophilus harrisii ENSSHAG00000017958 I
ENSSHAG00000018213 Sarcophilus harrisii ENSSHAG00000018213 I
ENSSSCG00000024651 Sus scrofa ENSSSCG00000024651 I
ENSSTOG00000022371 Ictidomys tridecemlineatus ENSSTOG00000022371 I
ENSSTOG00000023191 Ictidomys tridecemlineatus ENSSTOG00000023191 I
ENSXMAG00000003593 Xiphophorus maculatus ENSXMAG00000003593 I
ENSXMAG00000006950 Xiphophorus maculatus ENSXMAG00000006950 I
ENSXMAG00000014241 Xiphophorus maculatus ENSXMAG00000014241 I
estExt_GenewiseH_1.C_4620016 Branchiostoma floridae estExt_GenewiseH_1.C_4620016 I
Gfo_R007552 Geospiza fortis Gfo_R007552 I
Gfo_R016187 Geospiza fortis Gfo_R016187 I
HEY1 Anolis carolinensis ENSACAG00000013410 I
HEY1 Bos taurus ENSBTAG00000015717 I
HEY1 Canis familiaris ENSCAFG00000008391 I
HEY1 Callithrix jacchus ENSCJAG00000000477 I
HEY1 Cavia porcellus ENSCPOG00000008527 I
hey1 Danio rerio ENSDARG00000070538 I
HEY1 Dasypus novemcinctus ENSDNOG00000031981 I
HEY1 Equus caballus ENSECAG00000017010 I
HEY1 Felis catus ENSFCAG00000025542 I
HEY1 Homo sapiens ENSG00000164683 D
hey1 Gasterosteus aculeatus ENSGACG00000003436 I
HEY1 Gasterosteus aculeatus ENSGACG00000008712 I
HEY1 Gorilla gorilla ENSGGOG00000009960 I
HEY1 Loxodonta africana ENSLAFG00000011488 I
HEY1 Meleagris gallopavo ENSMGAG00000011620 I
HEY1 Microcebus murinus ENSMICG00000001913 I
HEY1 Macaca mulatta ENSMMUG00000002740 I
HEY1 Monodelphis domestica ENSMODG00000006648 I
Hey1 Mus musculus ENSMUSG00000040289 I
HEY1 Oryctolagus cuniculus ENSOCUG00000016568 I
HEY1 Otolemur garnettii ENSOGAG00000007210 I
HEY1 Ochotona princeps ENSOPRG00000003055 I
HEY1 Oryzias latipes ENSORLG00000008268 I
hey1 Oryzias latipes ENSORLG00000012953 I
HEY1 Procavia capensis ENSPCAG00000000598 I
HEY1 Pan troglodytes ENSPTRG00000020364 I
Hey1 Rattus norvegicus ENSRNOG00000011593 I
HEY1 Sus scrofa ENSSSCG00000006159 I
HEY1 Tupaia belangeri ENSTBEG00000010367 I
HEY1 Taeniopygia guttata ENSTGUG00000011633 N
hey1 Tetraodon nigroviridis ENSTNIG00000017785 I
HEY1 Tetraodon nigroviridis ENSTNIG00000018401 I
HEY1 Takifugu rubripes ENSTRUG00000013573 I
hey1 Takifugu rubripes ENSTRUG00000014561 I
hey1 Xenopus tropicalis XB-GENE-486694 I
hey1.S Xenopus laevis XB-GENE-865637 I
HEY2 Anolis carolinensis ENSACAG00000001813 I
HEY2 Bos taurus ENSBTAG00000000919 I
HEY2 Callithrix jacchus ENSCJAG00000003761 I
HEY2 Cavia porcellus ENSCPOG00000021417 I
hey2 Danio rerio ENSDARG00000013441 I
HEY2 Dasypus novemcinctus ENSDNOG00000044967 I
HEY2 Equus caballus ENSECAG00000014094 I
HEY2 Erinaceus europaeus ENSEEUG00000014040 I
HEY2 Echinops telfairi ENSETEG00000007340 I
HEY2 Felis catus ENSFCAG00000026914 I
HEY2 Homo sapiens ENSG00000135547 D
HEY2 Loxodonta africana ENSLAFG00000014208 I
HEY2 Meleagris gallopavo ENSMGAG00000013281 I
HEY2 Myotis lucifugus ENSMLUG00000002617 I
HEY2 Macaca mulatta ENSMMUG00000009491 I
HEY2 Monodelphis domestica ENSMODG00000017701 I
Hey2 Mus musculus ENSMUSG00000019789 D
HEY2 Otolemur garnettii ENSOGAG00000027812 I
HEY2 Pan troglodytes ENSPTRG00000018574 I
Hey2 Rattus norvegicus ENSRNOG00000013364 I
HEY2 Sorex araneus ENSSARG00000011755 I
HEY2 Sus scrofa ENSSSCG00000004223 I
HEY2 Tupaia belangeri ENSTBEG00000008836 I
HEY2 Taeniopygia guttata ENSTGUG00000011792 I
HEY2 Vicugna pacos ENSVPAG00000010498 I
hey2 Xenopus tropicalis XB-GENE-485923 I
HEYL Bos taurus ENSBTAG00000008688 I
heyl Danio rerio ENSDARG00000055798 I
HEYL Dasypus novemcinctus ENSDNOG00000010392 I
HEYL Equus caballus ENSECAG00000007220 I
HEYL Felis catus ENSFCAG00000010963 I
HEYL Homo sapiens ENSG00000163909 I
heyl Gasterosteus aculeatus ENSGACG00000007492 I
HEYL Gorilla gorilla ENSGGOG00000008268 I
HEYL Loxodonta africana ENSLAFG00000027563 I
HEYL Myotis lucifugus ENSMLUG00000029490 I
HEYL Macaca mulatta ENSMMUG00000018861 I
Heyl Mus musculus ENSMUSG00000032744 I
HEYL Ornithorhynchus anatinus ENSOANG00000010000 I
HEYL Oryctolagus cuniculus ENSOCUG00000000560 I
HEYL Otolemur garnettii ENSOGAG00000030877 I
heyl Oryzias latipes ENSORLG00000013651 I
HEYL Pan troglodytes ENSPTRG00000000574 I
Heyl Rattus norvegicus ENSRNOG00000015318 I
heyl Tetraodon nigroviridis ENSTNIG00000009228 I
heyl Takifugu rubripes ENSTRUG00000003399 I
HEYL Tursiops truncatus ENSTTRG00000014353 I
ISCW011251 Ixodes scapularis ISCW011251 I
L798_14068 Zootermopsis nevadensis L798_14068 I
LDEC001043 Leptinotarsa decemlineata LDEC001043 I
LotgiG171867 Lottia gigantea LotgiG171867 I
Myotis_brandtii_HEY1_10021379 Myotis brandtii Myotis_brandtii_HEY1_10021379 I
Myotis_brandtii_hey2_10035635 Myotis brandtii Myotis_brandtii_hey2_10035635 I
Ocbimv22039104m.g Octopus bimaculoides Ocbimv22039104m.g I
Ogr14041 Ophisaurus gracilis Ogr14041 I
Ogr15033 Ophisaurus gracilis Ogr15033 I
PABPC4 Canis familiaris ENSCAFG00000003081 I
PHUM454530 Pediculus humanus PHUM454530 I
Pvit_00065 Pogona vitticeps Pvit_00065 I
Pvit_01735 Pogona vitticeps Pvit_01735 I
Sakowv30023592m.g Saccoglossus kowalevskii Sakowv30023592m.g I
SPU_009465 Strongylocentrotus purpuratus SPU_009465 I
TC001593 Tribolium castaneum TC001593 I
tetur01g03020 Tetranychus urticae tetur01g03020 I
YQE_09192 Dendroctonus ponderosae YQE_09192 I