SNAPOd2T00027338001 (Oikopleura dioica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SNAPOd2T00027338001 T230391_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CBG08197
M02064_2.00 		Caenorhabditis briggsae
NNDACDNN
NNHGTHNN		 PBM
Weirauch et al.(2014)
pTH6408 		0.692 0.673
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.649 0.727
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.628 0.727
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.628 0.727
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.628 0.727
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.628 0.727
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.620 0.691
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.620 0.691
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.620 0.691
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.616 0.691
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.616 0.691
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.616 0.691
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.616 0.691
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.616 0.691
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.616 0.691
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SNAPOd2T00027338001 Homeodomain 45 102

Links

Other Homeodomain family TFs
Other Oikopleura dioica TFs

375 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_040_00102 Aquilegia coerulea Aquca_040_00102 N
BGIOSGA016274 Oryza indica BGIOSGA016274 N
BRADI5G08167 Brachypodium distachyon BRADI5G08167 N
cassava42936.valid.m1 Manihot esculenta cassava42936.valid.m1 N
cassava6546.valid.m1 Manihot esculenta cassava6546.valid.m1 N
Ca_08511 Cicer arietinum Ca_08511 N
Ciclev10030636m.g Citrus clementina Ciclev10030636m.g N
Eucgr.H04623 Eucalyptus grandis Eucgr.H04623 N
evm.TU.supercontig_43.77 Carica papaya evm.TU.supercontig_43.77 N
F775_11712 Aegilops tauschii F775_11712 N
GLYMA05G28090 Glycine max GLYMA05G28090 N
GLYMA08G11080 Glycine max GLYMA08G11080 N
Gorai.009G332200 Gossypium raimondii Gorai.009G332200 N
GRMZM2G143205 Zea mays GRMZM2G143205 N
GSMUA_Achr9G01330_001 Musa acuminata GSMUA_Achr9G01330_001 N
LPERR04G07320 Leersia perrieri LPERR04G07320 N
MDP0000262800 Malus domestica MDP0000262800 N
MTR_8g080800 Medicago truncatula MTR_8g080800 N
OBART04G10490 Oryza barthii OBART04G10490 N
OGLUM04G10170 Oryza glumaepatula OGLUM04G10170 N
OPUNC04G08570 Oryza punctata OPUNC04G08570 N
orange1.1g044976m.g Citrus sinensis orange1.1g044976m.g N
ORGLA02G0342600 Oryza glaberrima ORGLA02G0342600 N
ORGLA04G0075400 Oryza glaberrima ORGLA04G0075400 N
ORUFI04G11670 Oryza rufipogon ORUFI04G11670 N
OS04G0388500 Oryza sativa OS04G0388500 N
Pavir.Ga01952 Panicum virgatum Pavir.Ga01952 N
Pavir.Gb01963 Panicum virgatum Pavir.Gb01963 N
PDK_20s1550381g002 Phoenix dactylifera PDK_20s1550381g002 N
PK06349.1 Cannabis sativa PK06349.1 N
Pm007031 Prunus mume Pm007031 N
POPTR_0001s13700 Populus trichocarpa POPTR_0001s13700 N
POPTR_0003s16910 Populus trichocarpa POPTR_0003s16910 N
PRUPE_ppa000516mg Prunus persica PRUPE_ppa000516mg N
SapurV1A.0056s0050 Salix purpurea SapurV1A.0056s0050 N
Sb06g013850 Sorghum bicolor Sb06g013850 N
Si009249m.g Setaria italica Si009249m.g N
Solyc05g015650.2 Solanum lycopersicum Solyc05g015650.2 N
TCM_008731 Theobroma cacao TCM_008731 N
Traes_2AL_773EA7A5A Triticum aestivum Traes_2AL_773EA7A5A N
Traes_2BL_A89BDB407 Triticum aestivum Traes_2BL_A89BDB407 N
Traes_2BS_AF4D5351B Triticum aestivum Traes_2BS_AF4D5351B N
Traes_2DL_474B433DF Triticum aestivum Traes_2DL_474B433DF N
TRIUR3_26386 Triticum urartu TRIUR3_26386 N
VIT_01s0010g03850 Vitis vinifera VIT_01s0010g03850 N