Pavir.Gb01963 (Panicum virgatum)
CG-1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03859 (CG-1) IPR005559 Pavir.Gb01963 T163578_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Gb01963.1.p CG-1 13 127
Pavir.Gb01963.2.p CG-1 13 127
Pavir.Gb01963.3.p CG-1 13 127
Pavir.Gb01963.4.p CG-1 13 127

Links

Other CG-1 family TFs
Other Panicum virgatum TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Ga01952 Panicum virgatum Pavir.Ga01952 N 0.965
GRMZM2G143205 Zea mays GRMZM2G143205 N 0.956
Si009249m.g Setaria italica Si009249m.g N 0.956
BGIOSGA016274 Oryza indica BGIOSGA016274 N 0.947
LPERR04G07320 Leersia perrieri LPERR04G07320 N 0.947
OBART04G10490 Oryza barthii OBART04G10490 N 0.947
OGLUM04G10170 Oryza glumaepatula OGLUM04G10170 N 0.947
OPUNC04G08570 Oryza punctata OPUNC04G08570 N 0.947
ORGLA02G0342600 Oryza glaberrima ORGLA02G0342600 N 0.947
ORGLA04G0075400 Oryza glaberrima ORGLA04G0075400 N 0.947
ORUFI04G11670 Oryza rufipogon ORUFI04G11670 N 0.947
OS04G0388500 Oryza sativa OS04G0388500 N 0.947
OB04G17680 Oryza brachyantha OB04G17680 N 0.930
BRADI5G08167 Brachypodium distachyon BRADI5G08167 N 0.868
F775_11712 Aegilops tauschii F775_11712 N 0.833
Traes_2BL_A89BDB407 Triticum aestivum Traes_2BL_A89BDB407 N 0.833
Traes_2DL_474B433DF Triticum aestivum Traes_2DL_474B433DF N 0.833
TRIUR3_26386 Triticum urartu TRIUR3_26386 N 0.833
Traes_2AL_773EA7A5A Triticum aestivum Traes_2AL_773EA7A5A N 0.825
Sb06g013850 Sorghum bicolor Sb06g013850 N 0.807
GSMUA_Achr9G01330_001 Musa acuminata GSMUA_Achr9G01330_001 N 0.763
PRUPE_ppa000516mg Prunus persica PRUPE_ppa000516mg N 0.754
Pm007031 Prunus mume Pm007031 N 0.754
cassava6546.valid.m1 Manihot esculenta cassava6546.valid.m1 N 0.754
GLYMA05G28090 Glycine max GLYMA05G28090 N 0.737
Ca_08511 Cicer arietinum Ca_08511 N 0.728
Cucsa.349690 Cucumis sativus Cucsa.349690 N 0.728
PK06349.1 Cannabis sativa PK06349.1 N 0.728
PDK_20s1550381g002 Phoenix dactylifera PDK_20s1550381g002 N 0.728
GLYMA08G11080 Glycine max GLYMA08G11080 N 0.719
TCM_008731 Theobroma cacao TCM_008731 N 0.719
cassava42936.valid.m1 Manihot esculenta cassava42936.valid.m1 N 0.719
Gorai.009G332200 Gossypium raimondii Gorai.009G332200 N 0.719
MDP0000262800 Malus domestica MDP0000262800 N 0.719
MTR_8g080800 Medicago truncatula MTR_8g080800 N 0.711
POPTR_0003s16910 Populus trichocarpa POPTR_0003s16910 N 0.711
Traes_2BS_AF4D5351B Triticum aestivum Traes_2BS_AF4D5351B N 0.711
Aquca_040_00102 Aquilegia coerulea Aquca_040_00102 N 0.711
Ciclev10030636m.g Citrus clementina Ciclev10030636m.g N 0.711
Eucgr.H04623 Eucalyptus grandis Eucgr.H04623 N 0.711
orange1.1g044976m.g Citrus sinensis orange1.1g044976m.g N 0.711
Bra034007 Brassica rapa Bra034007 N 0.702
Solyc05g015650.2 Solanum lycopersicum Solyc05g015650.2 N 0.702
VIT_01s0010g03850 Vitis vinifera VIT_01s0010g03850 N 0.702
SapurV1A.0056s0050 Salix purpurea SapurV1A.0056s0050 N 0.702