BGLB012445 (Biomphalaria glabrata)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 BGLB012445 T232463_2.00 Vectorbase (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.735 0.413
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.735 0.413
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.735 0.413
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.735 0.413
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.735 0.413
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.735 0.413
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.735 0.413
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.735 0.413
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.735 0.413
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.662 0.239
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.662 0.239
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.662 0.239
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BGLB012445-PA Homeodomain 198 243

Links

Other Homeodomain family TFs
Other Biomphalaria glabrata TFs

1216 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27496.m000094 Ricinus communis 27496.m000094 N 0.000
AMTR_s00040p00189460 Amborella trichopoda AMTR_s00040p00189460 I 0.000
AMTR_s00069p00196720 Amborella trichopoda AMTR_s00069p00196720 N 0.000
Aquca_122_00004 Aquilegia coerulea Aquca_122_00004 N 0.000
AtGRF3 Arabidopsis lyrata fgenesh2_kg.4__1676__AT2G36400.1 N 0.000
AtGRF4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001379 N 0.000
BGIOSGA008811 Oryza indica BGIOSGA008811 N 0.000
BGIOSGA016961 Oryza indica BGIOSGA016961 N 0.000
Bo4g122960 Brassica oleracea Bo4g122960 N 0.000
Bo4g186220 Brassica oleracea Bo4g186220 N 0.000
Bo6g066990 Brassica oleracea Bo6g066990 N 0.000
Bo8g082350 Brassica oleracea Bo8g082350 N 0.000
Bo8g090420 Brassica oleracea Bo8g090420 N 0.000
Bostr.13129s0083 Boechera stricta Bostr.13129s0083 N 0.000
Bostr.23794s0452 Boechera stricta Bostr.23794s0452 N 0.000
Bra005268 Brassica rapa Bra005268 N 0.000
Bra006956 Brassica rapa Bra006956 N 0.000
Bra017240 Brassica rapa Bra017240 N 0.000
Bra019640 Brassica rapa Bra019640 N 0.000
Bra023066 Brassica rapa Bra023066 N 0.000
BRADI3G51685 Brachypodium distachyon BRADI3G51685 N 0.000
Cagra.0228s0030 Capsella grandiflora Cagra.0228s0030 N 0.000
Cagra.0612s0011 Capsella grandiflora Cagra.0612s0011 N 0.000
Carubv10017366m.g Capsella rubella Carubv10017366m.g N 0.000
Carubv10025172m.g Capsella rubella Carubv10025172m.g N 0.000
cassava32870.m1 Manihot esculenta cassava32870.m1 N 0.000
cassava37892.valid.m1 Manihot esculenta cassava37892.valid.m1 N 0.000
Ca_00772 Cicer arietinum Ca_00772 N 0.000
Ciclev10011856m.g Citrus clementina Ciclev10011856m.g N 0.000
Cla017990 Citrullus lanatus Cla017990 N 0.000
Cucsa.378420 Cucumis sativus Cucsa.378420 N 0.000
Eucgr.A01534 Eucalyptus grandis Eucgr.A01534 N 0.000
evm.TU.supercontig_5.63 Carica papaya evm.TU.supercontig_5.63 N 0.000
GLYMA03G35010 Glycine max GLYMA03G35010 N 0.000
GLYMA10G07790 Glycine max GLYMA10G07790 N 0.000
GLYMA13G21625 Glycine max GLYMA13G21625 N 0.000
GLYMA19G37740 Glycine max GLYMA19G37740 N 0.000
Gorai.009G406500 Gossypium raimondii Gorai.009G406500 N 0.000
GRF10 Oryza sativa OS02G0678800 N 0.000
GRF12 Oryza sativa OS04G0574500 N 0.000
GRF3 Arabidopsis thaliana AT2G36400 N 0.000
GRF4 Arabidopsis thaliana AT3G52910 N 0.000
GRMZM2G045977 Zea mays GRMZM2G045977 N 0.000
GRMZM2G067743 Zea mays GRMZM2G067743 I 0.000
GRMZM2G124566 Zea mays GRMZM2G124566 N 0.000
GSMUA_Achr11G21590_001 Musa acuminata GSMUA_Achr11G21590_001 I 0.000
GSMUA_Achr3G22790_001 Musa acuminata GSMUA_Achr3G22790_001 N 0.000
GSMUA_Achr5G20170_001 Musa acuminata GSMUA_Achr5G20170_001 I 0.000
GSMUA_Achr8G07650_001 Musa acuminata GSMUA_Achr8G07650_001 N 0.000
GSMUA_Achr8G12060_001 Musa acuminata GSMUA_Achr8G12060_001 N 0.000
LjSGA_054039.1 Lotus japonicus LjSGA_054039.1 N 0.000
LPERR02G22680 Leersia perrieri LPERR02G22680 N 0.000
Lus10014380.g Linum usitatissimum Lus10014380.g N 0.000
MDP0000214734 Malus domestica MDP0000214734 N 0.000
MDP0000808163 Malus domestica MDP0000808163 N 0.000
mgf001554m Mimulus guttatus mgf001554m N 0.000
MLOC_80060 Hordeum vulgare MLOC_80060 N 0.000
MTR_7g104050 Medicago truncatula MTR_7g104050 N 0.000
OB04G29390 Oryza brachyantha OB04G29390 N 0.000
OBART02G27850 Oryza barthii OBART02G27850 N 0.000
OBART04G22410 Oryza barthii OBART04G22410 N 0.000
OGLUM02G28430 Oryza glumaepatula OGLUM02G28430 N 0.000
OGLUM04G22390 Oryza glumaepatula OGLUM04G22390 N 0.000
OLONG_025493 Oryza longistaminata OLONG_025493 N 0.000
OMERI02G27040 Oryza meridionalis OMERI02G27040 N 0.000
ONIVA02G30970 Oryza nivara ONIVA02G30970 N 0.000
ONIVA04G21020 Oryza nivara ONIVA04G21020 N 0.000
OPUNC02G25570 Oryza punctata OPUNC02G25570 N 0.000
OPUNC04G20120 Oryza punctata OPUNC04G20120 N 0.000
ORGLA02G0239200 Oryza glaberrima ORGLA02G0239200 N 0.000
ORGLA04G0194300 Oryza glaberrima ORGLA04G0194300 N 0.000
ORUFI02G29340 Oryza rufipogon ORUFI02G29340 N 0.000
ORUFI04G24060 Oryza rufipogon ORUFI04G24060 N 0.000
Pavir.J06517 Panicum virgatum Pavir.J06517 N 0.000
PGSC0003DMG400028259 Solanum tuberosum PGSC0003DMG400028259 N 0.000
PK16254.1 Cannabis sativa PK16254.1 N 0.000
Pm026217 Prunus mume Pm026217 N 0.000
POPTR_0006s11630 Populus trichocarpa POPTR_0006s11630 N 0.000
PRUPE_ppa006912mg Prunus persica PRUPE_ppa006912mg N 0.000
SapurV1A.0208s0190 Salix purpurea SapurV1A.0208s0190 N 0.000
Sb04g031890 Sorghum bicolor Sb04g031890 N 0.000
Si018252m.g Setaria italica Si018252m.g N 0.000
Solyc09g009200.1 Solanum lycopersicum Solyc09g009200.1 N 0.000
Solyc10g083510.1 Solanum lycopersicum Solyc10g083510.1 N 0.000
TCM_022490 Theobroma cacao TCM_022490 N 0.000
Thhalv10010453m.g Eutrema salsugineum Thhalv10010453m.g N 0.000
Thhalv10016778m.g Eutrema salsugineum Thhalv10016778m.g N 0.000
VIT_08s0007g03760 Vitis vinifera VIT_08s0007g03760 N 0.000