nRc.2.0.1.g06302 (Romanomermis culicivorax)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 nRc.2.0.1.g06302 T235508_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TOS8
M02192_2.00 		Saccharomyces cerevisiae
NNNTKACGTMW
WKACGTMANNN		 PBM
Weirauch et al.(2014)
pTH5696 		0.668 0.545
TOS8
M00057_2.00 		Saccharomyces cerevisiae
NNNCRYGNNN
NNNCRYGNNN		 PBM
Badis et al.(2008)
TOS8_2100 		0.668 0.545
TOS8
M07486_2.00 		Saccharomyces cerevisiae
NWTGACAB
VTGTCAWN		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0408.1 		0.668 0.545
TOS8
M08574_2.00 		Saccharomyces cerevisiae
NWTGACAB
VTGTCAWN		 Misc
DeBoer et al.(2011)
YGL096W_494 		0.668 0.545
CUP9
M00059_2.00 		Saccharomyces cerevisiae
TGACABHW
WDVTGTCA		 PBM
Badis et al.(2008)
CUP9_4508 		0.650 0.509
CUP9
M01553_2.00 		Saccharomyces cerevisiae
NWGACAYWWH
DWWRTGTCWN		 PBM
Zhu et al.(2009)
Cup9 		0.650 0.509
CUP9
M07488_2.00 		Saccharomyces cerevisiae
TGACAYAWW
WWTRTGTCA		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0288.1 		0.650 0.509
CUP9
M08576_2.00 		Saccharomyces cerevisiae
TGACAYAWW
WWTRTGTCA		 Misc
DeBoer et al.(2011)
YPL177C_480 		0.650 0.509
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nRc.2.0.1.t06302-RA Homeodomain 131 188

Links

Other Homeodomain family TFs
Other Romanomermis culicivorax TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
21608_YPL177C Saccharomyces mikatae 21608_YPL177C I 0.650
22207_YPL177C Saccharomyces paradoxus 22207_YPL177C I 0.650
24630_YPL177C Saccharomyces bayanus 24630_YPL177C I 0.650
8079_YGL096W Saccharomyces bayanus 8079_YGL096W I 0.664
8695_YGL096W Saccharomyces paradoxus 8695_YGL096W I 0.668
AACERI_AaceriAFL049C Saccharomycetaceae sp ashbya aceri AACERI_AaceriAFL049C I 0.651
AAEL014550 Aedes aegypti AAEL014550 I 0.701
ADAC004901 Anopheles darlingi ADAC004901 I 0.701
AGOS_AFL049C Ashbya gossypii AGOS_AFL049C I 0.651
Aqu1.227912 Amphimedon queenslandica Aqu1.227912 I 0.608
AUEXF2481DRAFT_26059 Aureobasidium subglaciale AUEXF2481DRAFT_26059 I 0.640
BAUCODRAFT_212345 Baudoinia compniacensis BAUCODRAFT_212345 I 0.615
CAGL0C01551g Candida glabrata CAGL0C01551g I 0.600
CAOG_08013 Capsaspora owczarzaki CAOG_08013 I 0.715
CGI_10011944 Crassostrea gigas CGI_10011944 I 0.626
CUP9 Saccharomyces cerevisiae YPL177C D 0.650
DI09_143p10 Microsporidia sp DI09_143p10 I 0.737
DOTSEDRAFT_23295 Dothistroma septosporum DOTSEDRAFT_23295 I 0.615
Ecym_2247 Eremothecium cymbalariae Ecym_2247 I 0.647
ENSAMXG00000012410 Astyanax mexicanus ENSAMXG00000012410 I 0.626
ENSCSAG00000000068 Chlorocebus sabaeus ENSCSAG00000000068 I 0.606
ENSETEG00000011891 Echinops telfairi ENSETEG00000011891 I 0.672
ENSPVAG00000016033 Pteropus vampyrus ENSPVAG00000016033 I 0.606
ENSSTOG00000000447 Ictidomys tridecemlineatus ENSSTOG00000000447 I 0.626
fgenesh1_pg.C_chr_3000478 Mycosphaerella graminicola fgenesh1_pg.C_chr_3000478 I 0.605
HPODL_01870 Ogataea parapolymorpha HPODL_01870 I 0.629
KAFR_0A04370 Kazachstania africana KAFR_0A04370 I 0.658
KAFR_0G03650 Kazachstania africana KAFR_0G03650 I 0.600
KLLA0_B10450g Kluyveromyces lactis KLLA0_B10450g I 0.641
KNAG_0F02210 Kazachstania naganishii KNAG_0F02210 I 0.682
Kpol_1036p56 Vanderwaltozyma polyspora Kpol_1036p56 I 0.666
KUCA_T00004797001 Kuraishia capsulata KUCA_T00004797001 I 0.655
M437DRAFT_13662 Aureobasidium melanogenum M437DRAFT_13662 I 0.640
M438DRAFT_396225 Aureobasidium pullulans M438DRAFT_396225 I 0.640
Mycgr3G91768 Zymoseptoria tritici Mycgr3G91768 I 0.605
NAPIS_ORF00114 Nosema apis NAPIS_ORF00114 I 0.607
NCAS_0H01130 Naumovozyma castellii NCAS_0H01130 I 0.645
NDAI_0F02170 Naumovozyma dairenensis NDAI_0F02170 I 0.600
NDAI_0I01320 Naumovozyma dairenensis NDAI_0I01320 I 0.654
NEMVEDRAFT_v1g22855 Nematostella vectensis NEMVEDRAFT_v1g22855 I 0.606
O9G_002924 Rozella allomycis O9G_002924 I 0.679
Ocbimv22021194m.g Octopus bimaculoides Ocbimv22021194m.g I 0.602
PAS_chr3_0590 Komagataella pastoris PAS_chr3_0590 I 0.647
PTSG_05211 Salpingoeca rosetta PTSG_05211 I 0.654
Scas_Contig597.15 Saccharomyces castellii Scas_Contig597.15 I 0.645
SEPMUDRAFT_148705 Sphaerulina musiva SEPMUDRAFT_148705 I 0.615
SKUD_191904 Saccharomyces kudriavzevii SKUD_191904 I 0.664
SU7_3505 Saccharomyces arboricola SU7_3505 I 0.650
TBLA_0C03740 Tetrapisispora blattae TBLA_0C03740 I 0.686
TDEL_0F01810 Torulaspora delbrueckii TDEL_0F01810 I 0.645
TOS8 Saccharomyces cerevisiae YGL096W D 0.668
TPHA_0B02580 Tetrapisispora phaffii TPHA_0B02580 I 0.671
XP_002492817.1 Pichia pastoris XP_002492817.1 I 0.647
ZBAI_04266 Zygosaccharomyces bailii ZBAI_04266 I 0.645
ZBAI_07775 Zygosaccharomyces bailii ZBAI_07775 I 0.645
ZYRO0G22044g Zygosaccharomyces rouxii ZYRO0G22044g I 0.645