RSKR_0000548600 (Rhabditophanes kr3021)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 RSKR_0000548600 T235847_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
tin
M00559_2.00 		Drosophila melanogaster
NWYAAGTGGNN
NNCCACTTRWN		 PBM
Busser et al.(2012a)
Tin 		0.809 0.649
tin
M03809_2.00 		Drosophila melanogaster
BTYAAGTGSN
NSCACTTRAV		 SELEX
Nitta et al.(2015)
tin_1 		0.809 0.649
tin
M06284_2.00 		Drosophila melanogaster
BTYAAGTG
CACTTRAV		 B1H
Zhu et al.(2011)
Tin_Cell_FBgn0004110 		0.809 0.649
tin
M06285_2.00 		Drosophila melanogaster
BCTCAAGTGSVN
NBSCACTTGAGV		 B1H
Zhu et al.(2011)
tin_FlyReg_FBgn0004110 		0.809 0.649
tin
M06286_2.00 		Drosophila melanogaster
BWYAAGTR
YACTTRWV		 B1H
Zhu et al.(2011)
Tin_SOLEXA_FBgn0004110 		0.809 0.649
tin
M08421_2.00 		Drosophila melanogaster
DBTCRAGTGS
SCACTYGAVH		 ChIP-chip
Mathelier et al.(2014)
MA0247.2 		0.809 0.649
ceh-28
M08210_2.00 		Caenorhabditis elegans
AATCGATW
WATCGATT		 ChIP-seq
Contrino et al.(2012)
Mw138 		0.806 0.772
Nkx2-1
M00385_2.00 		Mus musculus
NNRAGDRN
NYHCTYNN		 PBM
Berger et al.(2008)
Titf1_1722 		0.797 0.667
Nkx2-4
M00514_2.00 		Mus musculus
NNRAGDRBNN
NNVYHCTYNN		 PBM
Berger et al.(2008)
Nkx2-4_3074 		0.797 0.667
NKX2-1
M09146_2.00 		Homo sapiens
BTKGAGWGBN
NVCWCTCMAV		 Misc
Kulakovskiy et al.(2013)
NKX21_HUMAN.H11MO.0.A 		0.797 0.667
Nkx2-1
M09171_2.00 		Mus musculus
NBTKGAGWGB
VCWCTCMAVN		 Misc
Kulakovskiy et al.(2013)
NKX21_MOUSE.H11MO.0.A 		0.797 0.667
Nkx2-1
M09563_2.00 		Mus musculus
BTBRAGWGBH
DVCWCTYVAV		 Misc
Heinz et al.(2010)
LungAC-Nkx2.1_GSE43252 		0.797 0.667
NKX2-1
M10694_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TITF1_Q3 		0.797 0.667
NKX2-1
M10695_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TTF1_Q5_01 		0.797 0.667
NKX2-1
M10696_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TTF1_Q5 		0.797 0.667
NKX2-1
M10697_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TTF1_Q6 		0.797 0.667
ceh-24
M02181_2.00 		Caenorhabditis elegans
NNRAKWRNN
NNYWMTYNN		 PBM
Weirauch et al.(2014)
pTH6327 		0.797 0.649
Nkx2-3
M00497_2.00 		Mus musculus
NNRAGDRNN
NNYHCTYNN		 PBM
Berger et al.(2008)
Nkx2-3_3435 		0.796 0.684
NKX2-3
M05042_2.00 		Homo sapiens
NNBAAGTGBN
NVCACTTVNN		 SELEX
Yin et al.(2017)
NKX2-3_eDBD_HT-SELEX 		0.796 0.684
NKX2-3
M05045_2.00 		Homo sapiens
BNBAAGTGBN
NVCACTTVNV		 SELEX
Yin et al.(2017)
NKX2-3_FL_HT-SELEX 		0.796 0.684
NKX2-3
M05043_2.00 		Homo sapiens
BNBAAGTGBN
NVCACTTVNV		 SELEX
Yin et al.(2017)
NKX2-3_eDBD_Methyl-HT-SELEX_1 		0.796 0.684
NKX2-3
M05044_2.00 		Homo sapiens
SDYAACGHB
VDCGTTRHS		 SELEX
Yin et al.(2017)
NKX2-3_eDBD_Methyl-HT-SELEX_2 		0.796 0.684
NKX2-3
M05046_2.00 		Homo sapiens
BNBAAGTGBN
NVCACTTVNV		 SELEX
Yin et al.(2017)
NKX2-3_FL_Methyl-HT-SELEX_1 		0.796 0.684
NKX2-3
M05047_2.00 		Homo sapiens
SWYAACSHB
VDSGTTRWS		 SELEX
Yin et al.(2017)
NKX2-3_FL_Methyl-HT-SELEX_2 		0.796 0.684
NKX2-5
M00323_2.00 		Homo sapiens
NWYAAGTGSNN
NNSCACTTRWN		 PBM
Barrera et al.(2016)
NKX2-5_REF 		0.796 0.667
Nkx2-5
M00404_2.00 		Mus musculus
NNNRAGDRBN
NVYHCTYNNN		 PBM
Berger et al.(2008)
Nkx2-5_3436 		0.796 0.667
NKX2-5
M05346_2.00 		Homo sapiens
BHYAAGTGBN
NVCACTTRDV		 SELEX
Yin et al.(2017)
NKX2-5_FL_HT-SELEX 		0.796 0.667
Nkx2-5
M02686_2.00 		Mus musculus
WTAAKWK
MWMTTAW		 SELEX
Mathelier et al.(2014)
MA0063.1 		0.796 0.667
Nkx2-5
M08136_2.00 		Mus musculus
SYTGAGWGSYH
DRSCWCTCARS		 ChIP-seq
Mathelier et al.(2014)
MA0503.1 		0.796 0.667
NKX2-5
M09163_2.00 		Homo sapiens
BKRAGWGV
BCWCTYMV		 Misc
Kulakovskiy et al.(2013)
NKX25_HUMAN.H11MO.0.B 		0.796 0.667
Nkx2-5
M09177_2.00 		Mus musculus
NBYBRAGTGS
SCACTYVRVN		 Misc
Kulakovskiy et al.(2013)
NKX25_MOUSE.H11MO.0.A 		0.796 0.667
Nkx2-5
M09567_2.00 		Mus musculus
HBRAGWGBNN
NNVCWCTYVD		 Misc
Heinz et al.(2010)
HL1-Nkx2.5.biotin_GSE21529 		0.796 0.667
NKX2-5
M10742_2.00 		Homo sapiens
TYAAGTG
CACTTRA		 Transfac
Matys et al.(2006)
V$NKX25_01 		0.796 0.667
NKX2-5
M10743_2.00 		Homo sapiens
CWTAATTV
BAATTAWG		 Transfac
Matys et al.(2006)
V$NKX25_02 		0.796 0.667
NKX2-5
M10744_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX25_Q5 		0.796 0.667
NKX2-5
M10745_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX25_Q6 		0.796 0.667
NKX2-5
M00321_2.00 		Homo sapiens
HNAAGTRBNN
NNVYACTTND		 PBM
Barrera et al.(2016)
NKX2-5_R161P 		0.796 0.667
NKX2-5
M05347_2.00 		Homo sapiens
BTYAAGTGGN
NCCACTTRAV		 SELEX
Yin et al.(2017)
NKX2-5_FL_Methyl-HT-SELEX_1 		0.796 0.667
NKX2-5
M05348_2.00 		Homo sapiens
BTYAACGAB
VTCGTTRAV		 SELEX
Yin et al.(2017)
NKX2-5_FL_Methyl-HT-SELEX_2 		0.796 0.667
NKX2-5
M00322_2.00 		Homo sapiens
NNNRNNN
NNNYNNN		 PBM
Barrera et al.(2016)
NKX2-5_R190C 		0.796 0.649
NKX2-5
M00324_2.00 		Homo sapiens
NHNNNNN
NNNNNDN		 PBM
Barrera et al.(2016)
NKX2-5_T178M 		0.796 0.649
scro
M03854_2.00 		Drosophila melanogaster
NNBRMGTGB
VCACKYVNN		 SELEX
Nitta et al.(2015)
scro_1 		0.792 0.667
Nkx2-6
M00496_2.00 		Mus musculus
HYAAGTRBNN
NNVYACTTRD		 PBM
Berger et al.(2008)
Nkx2-6_3437 		0.783 0.684
NKX2-5
M00320_2.00 		Homo sapiens
NHBAAKWRN
NYWMTTVDN		 PBM
Barrera et al.(2016)
NKX2-5_K183E 		0.763 0.649
Nkx2-9
M00520_2.00 		Mus musculus
NNNRAGDRBN
NVYHCTYNNN		 PBM
Berger et al.(2008)
Nkx2-9_3082 		0.754 0.649
Nkx2-9
M00800_2.00 		Mus musculus
NNRAGDRBNN
NNVYHCTYNN		 PBM
Weirauch et al.(2013)
pTH2842 		0.754 0.649
Nkx2-9
M09215_2.00 		Mus musculus
BTCAAGKRB
VYMCTTGAV		 Misc
Kulakovskiy et al.(2013)
NKX28_MOUSE.H11MO.0.C 		0.754 0.649
vnd
M06551_2.00 		Drosophila melanogaster
WYTCAAGTR
YACTTGARW		 B1H
Mathelier et al.(2014)
MA0253.1 		0.746 0.632
vnd
M06377_2.00 		Drosophila melanogaster
WYTCAAGTR
YACTTGARW		 B1H
Zhu et al.(2011)
Vnd_Cell_FBgn0003986 		0.746 0.632
vnd
M06378_2.00 		Drosophila melanogaster
KYTSAAGWGY
RCWCTTSARM		 B1H
Zhu et al.(2011)
vnd_FlyReg_FBgn0003986 		0.746 0.632
vnd
M06379_2.00 		Drosophila melanogaster
BTBAAGTR
YACTTVAV		 B1H
Zhu et al.(2011)
Vnd_SOLEXA_FBgn0003986 		0.746 0.632
vnd
M09683_2.00 		Drosophila melanogaster
TCAAGTGB
VCACTTGA		 Misc
Kulakovskiy et al.(2009)
vnd 		0.746 0.632
Nkx2-2
M00438_2.00 		Mus musculus
NNNRAGDRN
NYHCTYNNN		 PBM
Berger et al.(2008)
Nkx2-2_2823 		0.746 0.614
Nkx2-2
M09190_2.00 		Mus musculus
NTBRAGWGBBN
NVVCWCTYVAN		 Misc
Kulakovskiy et al.(2013)
NKX22_MOUSE.H11MO.0.A 		0.746 0.614
NKX2-2
M10681_2.00 		Homo sapiens
WTAAGTRBTT
AAVYACTTAW		 Transfac
Matys et al.(2006)
V$NKX22_01 		0.746 0.614
NKX2-2
M10682_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX2B_Q3_01 		0.746 0.614
NKX2-2
M10683_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX2B_Q3 		0.746 0.614
ceh-22
M00376_2.00 		Caenorhabditis elegans
WBRAGTRBNN
NNVYACTYVW		 PBM
Berger et al.(2006)
Ceh-22 		0.725 0.614
NKX2-8
M00301_2.00 		Homo sapiens
NNRAKDRB
VYHMTYNN		 PBM
Barrera et al.(2016)
NKX2-8_A94T 		0.722 0.649
NKX2-8
M00302_2.00 		Homo sapiens
NNRAGDRB
VYHCTYNN		 PBM
Barrera et al.(2016)
NKX2-8_REF 		0.722 0.632
NKX2-8
M05149_2.00 		Homo sapiens
BTSRAGTGBN
NVCACTYSAV		 SELEX
Yin et al.(2017)
NKX2-8_FL_HT-SELEX 		0.722 0.632
NKX2-8
M09145_2.00 		Homo sapiens
BTCAAGKRB
VYMCTTGAV		 Misc
Kulakovskiy et al.(2013)
NKX28_HUMAN.H11MO.0.C 		0.722 0.632
NKX2-8
M05150_2.00 		Homo sapiens
GCARTAACGACATC
GATGTCGTTAYTGC		 SELEX
Yin et al.(2017)
NKX2-8_FL_Methyl-HT-SELEX_1 		0.722 0.632
NKX2-8
M05151_2.00 		Homo sapiens
BTSAAGTGBN
NVCACTTSAV		 SELEX
Yin et al.(2017)
NKX2-8_FL_Methyl-HT-SELEX_2 		0.722 0.632
NKX2-8
M05152_2.00 		Homo sapiens
BTBAACGAB
VTCGTTVAV		 SELEX
Yin et al.(2017)
NKX2-8_FL_Methyl-HT-SELEX_3 		0.722 0.632
Q24782_9CNID
M02206_2.00 		Eleutheria dichotoma
TTAATTAA
TTAATTAA		 PBM
Weirauch et al.(2014)
pTH5486 		0.613 0.491
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
RSKR_0000548600.1 Homeodomain 95 151

Links

Other Homeodomain family TFs
Other Rhabditophanes kr3021 TFs

821 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30204.m001803 Ricinus communis 30204.m001803 N 0.000
ABI3 Arabidopsis thaliana AT3G24650 N 0.000
ABI3 Vitis vinifera VIT_07s0005g05400 N 0.000
ABI3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3002399 N 0.000
AMTR_s00049p00034730 Amborella trichopoda AMTR_s00049p00034730 N 0.000
Aquca_108_00003 Aquilegia coerulea Aquca_108_00003 N 0.000
BGIOSGA000276 Oryza indica BGIOSGA000276 N 0.000
Bo3g083650 Brassica oleracea Bo3g083650 N 0.000
Bostr.19424s0154 Boechera stricta Bostr.19424s0154 N 0.000
Bra013248 Brassica rapa Bra013248 N 0.000
BRADI2G58390 Brachypodium distachyon BRADI2G58390 N 0.000
Cagra.2774s0002 Capsella grandiflora Cagra.2774s0002 N 0.000
Carubv10016094m.g Capsella rubella Carubv10016094m.g N 0.000
cassava2971.m1 Manihot esculenta cassava2971.m1 N 0.000
cassava34238.m1 Manihot esculenta cassava34238.m1 N 0.000
Ca_21518 Cicer arietinum Ca_21518 N 0.000
chr1.CM0147.220.nd Lotus japonicus chr1.CM0147.220.nd N 0.000
Ciclev10019039m.g Citrus clementina Ciclev10019039m.g N 0.000
Cla015213 Citrullus lanatus Cla015213 N 0.000
Cucsa.078480 Cucumis sativus Cucsa.078480 N 0.000
Eucgr.H00815 Eucalyptus grandis Eucgr.H00815 N 0.000
evm.TU.supercontig_8.187 Carica papaya evm.TU.supercontig_8.187 N 0.000
F775_43744 Aegilops tauschii F775_43744 N 0.000
gene17562-v1.0-hybrid Fragaria vesca gene17562-v1.0-hybrid N 0.000
GLYMA08G47240 Glycine max GLYMA08G47240 N 0.000
GLYMA18G38490 Glycine max GLYMA18G38490 N 0.000
Gorai.001G184300 Gossypium raimondii Gorai.001G184300 N 0.000
GRMZM2G133398 Zea mays GRMZM2G133398 N 0.000
GSMUA_Achr7G23040_001 Musa acuminata GSMUA_Achr7G23040_001 N 0.000
GSMUA_AchrUn_randomG18520_001 Musa acuminata GSMUA_AchrUn_randomG18520_001 N 0.000
LPERR01G35880 Leersia perrieri LPERR01G35880 N 0.000
Lus10011888.g Linum usitatissimum Lus10011888.g N 0.000
Lus10022820.g Linum usitatissimum Lus10022820.g N 0.000
MDP0000166580 Malus domestica MDP0000166580 N 0.000
MDP0000309680 Malus domestica MDP0000309680 N 0.000
mgf023017m Mimulus guttatus mgf023017m N 0.000
MLOC_69727 Hordeum vulgare MLOC_69727 N 0.000
MTR_7g059330 Medicago truncatula MTR_7g059330 N 0.000
OB01G50120 Oryza brachyantha OB01G50120 N 0.000
OBART01G41410 Oryza barthii OBART01G41410 N 0.000
OGLUM01G45580 Oryza glumaepatula OGLUM01G45580 N 0.000
OLONG_001180 Oryza longistaminata OLONG_001180 N 0.000
OMERI01G38380 Oryza meridionalis OMERI01G38380 N 0.000
ONIVA01G46510 Oryza nivara ONIVA01G46510 N 0.000
orange1.1g038867m.g Citrus sinensis orange1.1g038867m.g N 0.000
ORGLA01G0353400 Oryza glaberrima ORGLA01G0353400 N 0.000
ORUFI01G44750 Oryza rufipogon ORUFI01G44750 N 0.000
Pavir.Ea03476 Panicum virgatum Pavir.Ea03476 N 0.000
Pavir.J03563 Panicum virgatum Pavir.J03563 N 0.000
PDK_20s1318001g001 Phoenix dactylifera PDK_20s1318001g001 N 0.000
PGSC0003DMG400020088 Solanum tuberosum PGSC0003DMG400020088 N 0.000
PGSC0003DMG400020155 Solanum tuberosum PGSC0003DMG400020155 N 0.000
Pm020417 Prunus mume Pm020417 N 0.000
POPTR_0002s25330 Populus trichocarpa POPTR_0002s25330 N 0.000
PRUPE_ppa001608mg Prunus persica PRUPE_ppa001608mg N 0.000
SapurV1A.0937s0080 Salix purpurea SapurV1A.0937s0080 N 0.000
Sb03g043480 Sorghum bicolor Sb03g043480 N 0.000
Si000497m.g Setaria italica Si000497m.g N 0.000
Solyc06g083590.2 Solanum lycopersicum Solyc06g083590.2 N 0.000
Solyc06g083600.1 Solanum lycopersicum Solyc06g083600.1 N 0.000
TCM_003056 Theobroma cacao TCM_003056 N 0.000
Thhalv10003110m.g Eutrema salsugineum Thhalv10003110m.g N 0.000
TRAES3BF066400010CFD_g Triticum aestivum TRAES3BF066400010CFD_g N 0.000
VP1 Oryza sativa OS01G0911700 N 0.000