CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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OMERI09G10160
(
Oryza meridionalis
)
HSF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00447 (HSF_DNA-bind)
IPR000232
OMERI09G10160
T241459_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HSFB4
M06936_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFB4_col_a
0.453
0.713
HSFB2B
M06945_2.00
Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSF7_col_a
0.450
0.724
HSFB2B
M06946_2.00
Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSF7_colamp_a
0.450
0.724
HSFB3
M06937_2.00
Arabidopsis thaliana
RRAANMWTCTAGAAV
BTTCTAGAWKNTTYY
Dap-seq
OMalley et al.(2016)
HSFB3_col_a
0.432
0.690
HSFB3
M06938_2.00
Arabidopsis thaliana
AABSTTCTAGAAN
NTTCTAGAASVTT
Dap-seq
OMalley et al.(2016)
HSFB3_colamp_a
0.432
0.690
HSFB2A
M00869_2.00
Arabidopsis thaliana
NNNNNTTCB
VGAANNNNN
PBM
Franco-Zorrilla et al.(2014)
HSFB2A
0.423
0.701
HSFB2A
M06952_2.00
Arabidopsis thaliana
GAANNTTCYAGA
TCTRGAANNTTC
Dap-seq
OMalley et al.(2016)
HSF6_col_a
0.423
0.701
HSFC1
M00868_2.00
Arabidopsis thaliana
NDTCBNNN
NNNVGAHN
PBM
Franco-Zorrilla et al.(2014)
HSFC1
0.416
0.609
HSFC1
M06943_2.00
Arabidopsis thaliana
GAASNTTCTAG
CTAGAANSTTC
Dap-seq
OMalley et al.(2016)
HSFC1_col_a
0.416
0.609
HSFC1
M06944_2.00
Arabidopsis thaliana
RGAASNTTCTAGAANVW
WBNTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFC1_colamp_a
0.416
0.609
HSFA4A
M06947_2.00
Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN
Dap-seq
OMalley et al.(2016)
HSF21_col_a
0.393
0.609
HSFA1E
M06939_2.00
Arabidopsis thaliana
RGAANNTTCTAGA
TCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSFA1E_col_a
0.371
0.632
HSFA1E
M06940_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFA1E_colamp_a
0.371
0.632
HSFA6B
M06941_2.00
Arabidopsis thaliana
RGAASNTTCTAGA
TCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFA6B_colamp_a
0.360
0.655
HSFA6B
M06942_2.00
Arabidopsis thaliana
RGAABNTTCTRGAAN
NTTCYAGAANVTTCY
Dap-seq
OMalley et al.(2016)
HSFA6B_col
0.360
0.655
HSFA6A
M06950_2.00
Arabidopsis thaliana
GAASNTTCTAGAANNW
WNNTTCTAGAANSTTC
Dap-seq
OMalley et al.(2016)
HSFA6A_col_a
0.356
0.575
HSFA6A
M06951_2.00
Arabidopsis thaliana
GAASNTTCTAGAA
TTCTAGAANSTTC
Dap-seq
OMalley et al.(2016)
HSFA6A_colamp_a
0.356
0.575
HSFA1B
M06948_2.00
Arabidopsis thaliana
GAANNTTCTAGA
TCTAGAANNTTC
Dap-seq
OMalley et al.(2016)
HSF3_col_a
0.351
0.644
HSFA1B
M06949_2.00
Arabidopsis thaliana
TTCYRG
CYRGAA
Dap-seq
OMalley et al.(2016)
HSF3_colamp_a
0.351
0.644
For this family, TFs with SR scores >
0.318
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OMERI09G10160.1
HSF
31
121
FLTKTHQMVEESATDEVISWGKEGRSFVVWKPVEFARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDRWEFANGNFRRGEQGLLSGIRRRK
Links
Other
HSF
family TFs
Other
Oryza meridionalis
TFs
1406 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ASL1
Arabidopsis lyrata
fgenesh2_kg.8__2729__AT5G66870.1
I
Bo2g167820
Brassica oleracea
Bo2g167820
I
Bo9g021590
Brassica oleracea
Bo9g021590
N
Bostr.0568s0111
Boechera stricta
Bostr.0568s0111
I
Cagra.20099s0001
Capsella grandiflora
Cagra.20099s0001
I
Carubv10026811m.g
Capsella rubella
Carubv10026811m.g
I
cassava16840.m1
Manihot esculenta
cassava16840.m1
I
cassava32691.m1
Manihot esculenta
cassava32691.m1
I
Ciclev10027275m.g
Citrus clementina
Ciclev10027275m.g
I
evm.TU.supercontig_331.6
Carica papaya
evm.TU.supercontig_331.6
I
gene24088-v1.0-hybrid
Fragaria vesca
gene24088-v1.0-hybrid
I
LBD36
Arabidopsis thaliana
AT5G66870
I
Lus10005313.g
Linum usitatissimum
Lus10005313.g
I
orange1.1g039589m.g
Citrus sinensis
orange1.1g039589m.g
I
PGSC0003DMG400010023
Solanum tuberosum
PGSC0003DMG400010023
I
PK18922.1
Cannabis sativa
PK18922.1
I
Pm026450
Prunus mume
Pm026450
I
POPTR_0005s14150
Populus trichocarpa
POPTR_0005s14150
I
POPTR_0007s11460
Populus trichocarpa
POPTR_0007s11460
I
PRUPE_ppa026393mg
Prunus persica
PRUPE_ppa026393mg
I
SapurV1A.0428s0090
Salix purpurea
SapurV1A.0428s0090
I
SapurV1A.0641s0140
Salix purpurea
SapurV1A.0641s0140
I
SapurV1A.0811s0020
Salix purpurea
SapurV1A.0811s0020
I
Solyc02g090410.2
Solanum lycopersicum
Solyc02g090410.2
I
Thhalv10004535m.g
Eutrema salsugineum
Thhalv10004535m.g
I
VIT_00s0215g00010
Vitis vinifera
VIT_00s0215g00010
I