OMERI09G10160 (Oryza meridionalis)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00447 (HSF_DNA-bind) IPR000232 OMERI09G10160 T241459_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HSFB4
M06936_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN

NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFB4_col_a
0.453 0.713
HSFB2B
M06945_2.00
Arabidopsis thaliana
RGAANNTTCTAGAA

TTCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSF7_col_a
0.450 0.724
HSFB2B
M06946_2.00
Arabidopsis thaliana
RGAANNTTCTAGAA

TTCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSF7_colamp_a
0.450 0.724
HSFB3
M06937_2.00
Arabidopsis thaliana
RRAANMWTCTAGAAV

BTTCTAGAWKNTTYY
Dap-seq
OMalley et al.(2016)
HSFB3_col_a
0.432 0.690
HSFB3
M06938_2.00
Arabidopsis thaliana
AABSTTCTAGAAN

NTTCTAGAASVTT
Dap-seq
OMalley et al.(2016)
HSFB3_colamp_a
0.432 0.690
HSFB2A
M00869_2.00
Arabidopsis thaliana
NNNNNTTCB

VGAANNNNN
PBM
Franco-Zorrilla et al.(2014)
HSFB2A
0.423 0.701
HSFB2A
M06952_2.00
Arabidopsis thaliana
GAANNTTCYAGA

TCTRGAANNTTC
Dap-seq
OMalley et al.(2016)
HSF6_col_a
0.423 0.701
HSFC1
M00868_2.00
Arabidopsis thaliana
NDTCBNNN

NNNVGAHN
PBM
Franco-Zorrilla et al.(2014)
HSFC1
0.416 0.609
HSFC1
M06943_2.00
Arabidopsis thaliana
GAASNTTCTAG

CTAGAANSTTC
Dap-seq
OMalley et al.(2016)
HSFC1_col_a
0.416 0.609
HSFC1
M06944_2.00
Arabidopsis thaliana
RGAASNTTCTAGAANVW

WBNTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFC1_colamp_a
0.416 0.609
HSFA4A
M06947_2.00
Arabidopsis thaliana
NNNRGAABBTTCTAGAANN

NNTTCTAGAAVVTTCYNNN
Dap-seq
OMalley et al.(2016)
HSF21_col_a
0.393 0.609
HSFA1E
M06939_2.00
Arabidopsis thaliana
RGAANNTTCTAGA

TCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSFA1E_col_a
0.371 0.632
HSFA1E
M06940_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN

NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFA1E_colamp_a
0.371 0.632
HSFA6B
M06941_2.00
Arabidopsis thaliana
RGAASNTTCTAGA

TCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFA6B_colamp_a
0.360 0.655
HSFA6B
M06942_2.00
Arabidopsis thaliana
RGAABNTTCTRGAAN

NTTCYAGAANVTTCY
Dap-seq
OMalley et al.(2016)
HSFA6B_col
0.360 0.655
HSFA6A
M06950_2.00
Arabidopsis thaliana
GAASNTTCTAGAANNW

WNNTTCTAGAANSTTC
Dap-seq
OMalley et al.(2016)
HSFA6A_col_a
0.356 0.575
HSFA6A
M06951_2.00
Arabidopsis thaliana
GAASNTTCTAGAA

TTCTAGAANSTTC
Dap-seq
OMalley et al.(2016)
HSFA6A_colamp_a
0.356 0.575
HSFA1B
M06948_2.00
Arabidopsis thaliana
GAANNTTCTAGA

TCTAGAANNTTC
Dap-seq
OMalley et al.(2016)
HSF3_col_a
0.351 0.644
HSFA1B
M06949_2.00
Arabidopsis thaliana
TTCYRG

CYRGAA
Dap-seq
OMalley et al.(2016)
HSF3_colamp_a
0.351 0.644
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OMERI09G10160.1 HSF 31 121

Links

Other HSF family TFs
Other Oryza meridionalis TFs

1406 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ASL1 Arabidopsis lyrata fgenesh2_kg.8__2729__AT5G66870.1 I
Bo2g167820 Brassica oleracea Bo2g167820 I
Bo9g021590 Brassica oleracea Bo9g021590 N
Bostr.0568s0111 Boechera stricta Bostr.0568s0111 I
Cagra.20099s0001 Capsella grandiflora Cagra.20099s0001 I
Carubv10026811m.g Capsella rubella Carubv10026811m.g I
cassava16840.m1 Manihot esculenta cassava16840.m1 I
cassava32691.m1 Manihot esculenta cassava32691.m1 I
Ciclev10027275m.g Citrus clementina Ciclev10027275m.g I
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I
gene24088-v1.0-hybrid Fragaria vesca gene24088-v1.0-hybrid I
LBD36 Arabidopsis thaliana AT5G66870 I
Lus10005313.g Linum usitatissimum Lus10005313.g I
orange1.1g039589m.g Citrus sinensis orange1.1g039589m.g I
PGSC0003DMG400010023 Solanum tuberosum PGSC0003DMG400010023 I
PK18922.1 Cannabis sativa PK18922.1 I
Pm026450 Prunus mume Pm026450 I
POPTR_0005s14150 Populus trichocarpa POPTR_0005s14150 I
POPTR_0007s11460 Populus trichocarpa POPTR_0007s11460 I
PRUPE_ppa026393mg Prunus persica PRUPE_ppa026393mg I
SapurV1A.0428s0090 Salix purpurea SapurV1A.0428s0090 I
SapurV1A.0641s0140 Salix purpurea SapurV1A.0641s0140 I
SapurV1A.0811s0020 Salix purpurea SapurV1A.0811s0020 I
Solyc02g090410.2 Solanum lycopersicum Solyc02g090410.2 I
Thhalv10004535m.g Eutrema salsugineum Thhalv10004535m.g I
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I