CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0006s24330
(
Populus trichocarpa
)
HSF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00447 (HSF_DNA-bind)
IPR000232
POPTR_0006s24330
T241852_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HSFA6B
M06941_2.00
Arabidopsis thaliana
RGAASNTTCTAGA
TCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFA6B_colamp_a
0.444
0.770
HSFA6B
M06942_2.00
Arabidopsis thaliana
RGAABNTTCTRGAAN
NTTCYAGAANVTTCY
Dap-seq
OMalley et al.(2016)
HSFA6B_col
0.444
0.770
HSFA4A
M06947_2.00
Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN
Dap-seq
OMalley et al.(2016)
HSF21_col_a
0.436
0.678
HSFA1E
M06939_2.00
Arabidopsis thaliana
RGAANNTTCTAGA
TCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSFA1E_col_a
0.436
0.724
HSFA1E
M06940_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFA1E_colamp_a
0.436
0.724
HSFA1B
M06948_2.00
Arabidopsis thaliana
GAANNTTCTAGA
TCTAGAANNTTC
Dap-seq
OMalley et al.(2016)
HSF3_col_a
0.427
0.736
HSFA1B
M06949_2.00
Arabidopsis thaliana
TTCYRG
CYRGAA
Dap-seq
OMalley et al.(2016)
HSF3_colamp_a
0.427
0.736
HSFA6A
M06950_2.00
Arabidopsis thaliana
GAASNTTCTAGAANNW
WNNTTCTAGAANSTTC
Dap-seq
OMalley et al.(2016)
HSFA6A_col_a
0.400
0.655
HSFA6A
M06951_2.00
Arabidopsis thaliana
GAASNTTCTAGAA
TTCTAGAANSTTC
Dap-seq
OMalley et al.(2016)
HSFA6A_colamp_a
0.400
0.655
HSFB4
M06936_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFB4_col_a
0.399
0.632
HSFC1
M00868_2.00
Arabidopsis thaliana
NDTCBNNN
NNNVGAHN
PBM
Franco-Zorrilla et al.(2014)
HSFC1
0.381
0.667
HSFC1
M06943_2.00
Arabidopsis thaliana
GAASNTTCTAG
CTAGAANSTTC
Dap-seq
OMalley et al.(2016)
HSFC1_col_a
0.381
0.667
HSFC1
M06944_2.00
Arabidopsis thaliana
RGAASNTTCTAGAANVW
WBNTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFC1_colamp_a
0.381
0.667
HSFB2B
M06945_2.00
Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSF7_col_a
0.371
0.621
HSFB2B
M06946_2.00
Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSF7_colamp_a
0.371
0.621
HSFB2A
M00869_2.00
Arabidopsis thaliana
NNNNNTTCB
VGAANNNNN
PBM
Franco-Zorrilla et al.(2014)
HSFB2A
0.369
0.632
HSFB2A
M06952_2.00
Arabidopsis thaliana
GAANNTTCYAGA
TCTRGAANNTTC
Dap-seq
OMalley et al.(2016)
HSF6_col_a
0.369
0.632
HSFB3
M06937_2.00
Arabidopsis thaliana
RRAANMWTCTAGAAV
BTTCTAGAWKNTTYY
Dap-seq
OMalley et al.(2016)
HSFB3_col_a
0.353
0.575
HSFB3
M06938_2.00
Arabidopsis thaliana
AABSTTCTAGAAN
NTTCTAGAASVTT
Dap-seq
OMalley et al.(2016)
HSFB3_colamp_a
0.353
0.575
For this family, TFs with SR scores >
0.318
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0006s24330.1
HSF
44
134
FLTKTYEMVEDPSTDTVVSWSGGRNSFIVWDSHKFSTTLLPKHFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRKR
Links
Other
HSF
family TFs
Other
Populus trichocarpa
TFs
1414 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BGIOSGA022362
Oryza indica
BGIOSGA022362
N
Ca_17354
Cicer arietinum
Ca_17354
N
GLYMA09G05840
Glycine max
GLYMA09G05840
N
GLYMA09G05850
Glycine max
GLYMA09G05850
N
GLYMA09G05860
Glycine max
GLYMA09G05860
N
GLYMA15G17090
Glycine max
GLYMA15G17090
N
GLYMA15G17100
Glycine max
GLYMA15G17100
N
Gorai.006G250000
Gossypium raimondii
Gorai.006G250000
N
Gorai.006G250100
Gossypium raimondii
Gorai.006G250100
N
LPERR06G03670
Leersia perrieri
LPERR06G03670
N
MTR_2g438180
Medicago truncatula
MTR_2g438180
N
OBART06G03990
Oryza barthii
OBART06G03990
N
OBART08G14070
Oryza barthii
OBART08G14070
N
OGLUM06G04110
Oryza glumaepatula
OGLUM06G04110
N
OGLUM08G14830
Oryza glumaepatula
OGLUM08G14830
N
OMERI06G04590
Oryza meridionalis
OMERI06G04590
N
ONIVA03G12480
Oryza nivara
ONIVA03G12480
N
ONIVA06G20210
Oryza nivara
ONIVA06G20210
N
OPUNC06G03800
Oryza punctata
OPUNC06G03800
N
ORGLA06G0037100
Oryza glaberrima
ORGLA06G0037100
N
ORUFI06G04020
Oryza rufipogon
ORUFI06G04020
N
ORUFI08G15950
Oryza rufipogon
ORUFI08G15950
N