Gfo_R003357 (Geospiza fortis)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00605 (IRF) IPR001346 Gfo_R003357 T244549_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF4
M03334_2.00 		Homo sapiens
HCGAAACCGAAACYW
WRGTTTCGGTTTCGD		 SELEX
Jolma et al.(2013)
IRF4_1 		0.990 0.990
IRF4
M05539_2.00 		Homo sapiens
NYGAAACYGAAACYN
NRGTTTCRGTTTCRN		 SELEX
Yin et al.(2017)
IRF4_FL_HT-SELEX 		0.990 0.990
IRF4
M07978_2.00 		Homo sapiens
DNDVNNGWWVTGAVWVWN
NWBWBTCABWWCNNBHNH		 ChIP-seq
Gerstein et al.(2012)
GM12878_IRF4_HudsonAlpha 		0.990 0.990
IRF4
M09235_2.00 		Homo sapiens
NDWDRRGGAASTGARAVH
DBTYTCASTTCCYYHWHN		 Misc
Kulakovskiy et al.(2013)
IRF4_HUMAN.H11MO.0.A 		0.990 0.990
IRF4
M09595_2.00 		Homo sapiens
HNYGAAASYD
HRSTTTCRND		 Misc
Heinz et al.(2010)
GM12878-IRF4_GSE32465 		0.990 0.990
IRF4
M10885_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_07 		0.990 0.990
IRF4
M10886_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_08 		0.990 0.990
IRF4
M10887_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_Q5_01 		0.990 0.990
IRF4
M10888_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_Q5 		0.990 0.990
IRF4
M10889_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_Q6 		0.990 0.990
IRF4
M05540_2.00 		Homo sapiens
NYGAAASYGAWASHN
NDSTWTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF4_FL_Methyl-HT-SELEX 		0.990 0.990
Irf4
M00175_2.00 		Mus musculus
NNNYGAWASN
NSTWTCRNNN		 PBM
Badis et al.(2009)
Irf4_3476 		0.981 0.981
Irf4
M09243_2.00 		Mus musculus
NDAWVVRGAASTGARAVH
DBTYTCASTTCYBBWTHN		 Misc
Kulakovskiy et al.(2013)
IRF4_MOUSE.H11MO.0.A 		0.981 0.981
IRF8
M03335_2.00 		Homo sapiens
HCGAAACYGAAACY
RGTTTCRGTTTCGD		 SELEX
Jolma et al.(2013)
IRF8_1 		0.800 0.800
IRF8
M03336_2.00 		Homo sapiens
HCGAAACCGAAACT
AGTTTCGGTTTCGD		 SELEX
Jolma et al.(2013)
IRF8_2 		0.800 0.800
IRF8
M05541_2.00 		Homo sapiens
NYGAAASYGAAASHN
NDSTTTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF8_eDBD_HT-SELEX 		0.800 0.800
IRF8
M05543_2.00 		Homo sapiens
NCGAAACYGAAACYN
NRGTTTCRGTTTCGN		 SELEX
Yin et al.(2017)
IRF8_FL_HT-SELEX 		0.800 0.800
IRF8
M09236_2.00 		Homo sapiens
NDDDRRGGAASTGAAASYNN
NNRSTTTCASTTCCYYHHHN		 Misc
Kulakovskiy et al.(2013)
IRF8_HUMAN.H11MO.0.B 		0.800 0.800
Irf8
M09246_2.00 		Mus musculus
NDDDRRGGAASTGAAASYNN
NNRSTTTCASTTCCYYHHHN		 Misc
Kulakovskiy et al.(2013)
IRF8_MOUSE.H11MO.0.A 		0.800 0.800
IRF8
M10890_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ICSBP_Q6 		0.800 0.800
IRF8
M10891_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF8_Q6 		0.800 0.800
IRF8
M05542_2.00 		Homo sapiens
NYGAAASYGAAASYN
NRSTTTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF8_eDBD_Methyl-HT-SELEX 		0.800 0.800
IRF8
M05544_2.00 		Homo sapiens
NYGAAASYGAAACYD
HRGTTTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF8_FL_Methyl-HT-SELEX 		0.800 0.800
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R003357 IRF 19 124

Links

Other IRF family TFs
Other Geospiza fortis TFs

159 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACAC_0001093601 Angiostrongylus cantonensis ACAC_0001093601 I
ACOC_0000846801 Angiostrongylus costaricensis ACOC_0000846801 I
ANCCAN_04319 Ancylostoma caninum ANCCAN_04319 I
ANCCEY_00577 Ancylostoma ceylanicum ANCCEY_00577 I
Bm4538 Brugia malayi Bm4538 N
CGOC_0000858101 Cylicostephanus goldi CGOC_0000858101 I
DICVIV_02775 Dictyocaulus viviparus DICVIV_02775 I
EEL_0000428401 Elaeophora elaphi EEL_0000428401 N
GPLIN_000941800 Globodera pallida GPLIN_000941800 I
GPUH_0001027101 Gongylonema pulchrum GPUH_0001027101 N
HCOI01121900 Haemonchus contortus HCOI01121900 I
HPBE_0002474001 Heligmosomoides bakeri HPBE_0002474001 I
HPLM_0001857601 Haemonchus placei HPLM_0001857601 I
L889_g27966 Steinernema feltiae L889_g27966 N
LOAG_07256 Loa loa LOAG_07256 N
nAv.1.0.1.g08834 Acanthocheilonema viteae nAv.1.0.1.g08834 N
NBR_0000263101 Nippostrongylus brasiliensis NBR_0000263101 I
NBR_0000299801 Nippostrongylus brasiliensis NBR_0000299801 I
nDi.2.2.2.g07826 Dirofilaria immitis nDi.2.2.2.g07826 N
NECAME_04511 Necator americanus NECAME_04511 I
nLs.2.1.2.g06012 Litomosoides sigmodontis nLs.2.1.2.g06012 N
nOo.2.0.1.g02551 Onchocerca ochengi nOo.2.0.1.g02551 N
PPA14541 Pristionchus pacificus PPA14541 I
scaffold60-EXSNAP2012.12 Pristionchus exspectatus scaffold60-EXSNAP2012.12 I
SVUK_0000451101 Strongylus vulgaris SVUK_0000451101 I
TCLT_0000678201 Thelazia callipaeda TCLT_0000678201 I
TELCIR_07248 Teladorsagia circumcincta TELCIR_07248 I
TELCIR_11314 Teladorsagia circumcincta TELCIR_11314 I
tetur30g00270 Tetranychus urticae tetur30g00270 I
WBGene00244598 Onchocerca volvulus WBGene00244598 N