CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

BGIOSGA032254 *(Oryza indica)* LOB
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03195 (DUF260)	IPR004883	BGIOSGA032254	T244947_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
LBD18 M06962_2.00	Arabidopsis thaliana	SCGGRRAWHVHGSMRNNDN	NHNNYKSCDBDWTYYCCGS	Dap-seq OMalley et al.(2016) LBD18_col_a	0.818	0.818
LBD18 M06963_2.00	Arabidopsis thaliana	CDBDWTTTMHGSHRN	NYDSCDKAAAWHVHG	Dap-seq OMalley et al.(2016) LBD18_colamp_a	0.818	0.818
LBD30 M01066_2.00	Arabidopsis thaliana	BVWWWHVNGG	CCNBDWWWBV	PBM Sullivan et al.(2014) pTH7467	0.798	0.798
LBD30 M01067_2.00	Arabidopsis thaliana	VWWWNVNGGD	HCCNBNWWWB	PBM Sullivan et al.(2014) pTH7616	0.798	0.798
LBD16 M00870_2.00	Arabidopsis thaliana	DNHHYVCGG	CCGBRDDNH	PBM Franco-Zorrilla et al.(2014) LBD16	0.737	0.737
LBD16 M06958_2.00	Arabidopsis thaliana	SCGGAAAWNVCGSMR	YKSCGBNWTTTCCGS	Dap-seq OMalley et al.(2016) ASL18_col_a	0.737	0.737
LBD16 M06959_2.00	Arabidopsis thaliana	SCDBDWTTYVCGSHDN	NHDSCGBRAAWHVHGS	Dap-seq OMalley et al.(2016) ASL18_colamp_a	0.737	0.737
LBD19 M06960_2.00	Arabidopsis thaliana	CCKKAAAWHMMGSND	HNSCKKDWTTTMMGG	Dap-seq OMalley et al.(2016) LBD19_col_a	0.727	0.727
LBD19 M06961_2.00	Arabidopsis thaliana	WWYCCGG	CCGGRWW	Dap-seq OMalley et al.(2016) LBD19_colamp_a	0.727	0.727
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
BGIOSGA032254-PA	LOB	33	132	PCGACKFLRRKCVQGCIFAPYFDSEAGAAHFAAVHKVFGASNVSKLLQQIPAHRRLDAVVTICYEAQARLRDPVYGCVAHIFHLQHQVAGLQSELNYLQG

Links
Other LOB family TFs
Other *Oryza indica* TFs

293 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
cers2a	Danio rerio	ENSDARG00000013704	N
cers3b	Tetraodon nigroviridis	ENSTNIG00000019226	N
ENSAMXG00000004106	Astyanax mexicanus	ENSAMXG00000004106	N
ENSGMOG00000016733	Gadus morhua	ENSGMOG00000016733	N
ENSLACG00000017653	Latimeria chalumnae	ENSLACG00000017653	N
ENSMGAG00000006564	Meleagris gallopavo	ENSMGAG00000006564	N
ENSPFOG00000013108	Poecilia formosa	ENSPFOG00000013108	N
ENSPFOG00000019166	Poecilia formosa	ENSPFOG00000019166	N
ENSXMAG00000003751	Xiphophorus maculatus	ENSXMAG00000003751	N