CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
POPTR_0001s20110
(
Populus trichocarpa
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
POPTR_0001s20110
T245855_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0001s20110.1
LOB
14
112
ACAACKYQRRKCAPDCILAPYFPHNRQRQFLNAHKLFGVSNISKIIKNLNPPEKDEAMRTIIFQSDVRANDPVGGCYRMIRELQRQIEYTRAELDIALH
Links
Other
LOB
family TFs
Other
Populus trichocarpa
TFs
34 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
30076.m004701
Ricinus communis
30076.m004701
N
cassava28223.m1
Manihot esculenta
cassava28223.m1
N
Lus10036329.g
Linum usitatissimum
Lus10036329.g
N
POPTR_0002s20080
Populus trichocarpa
POPTR_0002s20080
N
POPTR_0014s11940
Populus trichocarpa
POPTR_0014s11940
N
SapurV1A.0052s0100
Salix purpurea
SapurV1A.0052s0100
N
SapurV1A.0158s0510
Salix purpurea
SapurV1A.0158s0510
N
SapurV1A.0494s0210
Salix purpurea
SapurV1A.0494s0210
N