Sb01g041130 (Sorghum bicolor)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Sb01g041130 T245961_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.889 0.889
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.889 0.889
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.848 0.848
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.848 0.848
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.778 0.778
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.778 0.778
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.778 0.778
LBD19
M06960_2.00 		Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG		 Dap-seq
OMalley et al.(2016)
LBD19_col_a 		0.778 0.778
LBD19
M06961_2.00 		Arabidopsis thaliana
WWYCCGG
CCGGRWW		 Dap-seq
OMalley et al.(2016)
LBD19_colamp_a 		0.778 0.778
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb01g041130.1 LOB 39 138

Links

Other LOB family TFs
Other Sorghum bicolor TFs

393 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CPIJ013490 Culex quinquefasciatus CPIJ013490 I
CpipJ_CPIJ013490 Culex pipiens CpipJ_CPIJ013490 I
ENSLACG00000009209 Latimeria chalumnae ENSLACG00000009209 I
ENSNLEG00000002771 Nomascus leucogenys ENSNLEG00000002771 I
ENSOCUG00000015389 Oryctolagus cuniculus ENSOCUG00000015389 I
ENSONIG00000014698 Oreochromis niloticus ENSONIG00000014698 I
e_gw.291.69.1 Branchiostoma floridae e_gw.291.69.1 I
PPAI001408 Phlebotomus papatasi PPAI001408 I
tead1b Danio rerio ENSDARG00000059483 I
TEAD3 Oryctolagus cuniculus ENSOCUG00000004072 I
Tead3 Rattus norvegicus ENSRNOG00000000506 I
TEAD4 Microcebus murinus ENSMICG00000000108 I
TEAD4 Monodelphis domestica ENSMODG00000018340 I
Tead4 Mus musculus ENSMUSG00000030353 D
TEAD4 Loxodonta africana ENSLAFG00000006998 I
TEAD4 Gorilla gorilla ENSGGOG00000006216 I
TEAD4 Equus caballus ENSECAG00000011303 I
TEAD4 Pteropus vampyrus ENSPVAG00000013230 I
TEAD4 Sus scrofa ENSSSCG00000000736 I
TEAD4 Callithrix jacchus ENSCJAG00000023239 I