CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PK26075.1
(
Cannabis sativa
)
MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF10545 (MADF_DNA_bdg)
IPR006578
PK26075.1
T251178_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK26075.1
M01265_2.00
Cannabis sativa
NNRGTDANWN
NWNTHACYNN
PBM
Lambert et al.(2019)
pTH11260
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.812
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01265_2.00
MADF
51
121
EMDTVFRDATLKGPLWEDVSRKLAELGYKRSGKKCKEKFENVHKYYKRTKEGRAGRQDGKTYKFFTELEAL
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PK26075.1
MADF
86
156
EMDTVFRDATLKGPLWEDVSRKLAELGYKRSGKKCKEKFENVHKYYKRTKEGRAGRQDGKTYKFFTELEAL
Links
Other
MADF
family TFs
Other
Cannabis sativa
TFs
9 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Lus10014375.g
Linum usitatissimum
Lus10014375.g
I
0.850
Lus10023872.g
Linum usitatissimum
Lus10023872.g
I
0.835
OBART10G15720
Oryza barthii
OBART10G15720
I
0.916
OLONG_007248
Oryza longistaminata
OLONG_007248
I
0.886
Pavir.Aa01102
Panicum virgatum
Pavir.Aa01102
I
0.878
PK27404.1
Cannabis sativa
PK27404.1
I
0.829
Traes_1DL_9EFDBD741
Triticum aestivum
Traes_1DL_9EFDBD741
I
0.920
Traes_4DL_64E445D4A
Triticum aestivum
Traes_4DL_64E445D4A
I
0.914
Traes_6DL_09329CC5D
Triticum aestivum
Traes_6DL_09329CC5D
I
0.885