CpipJ_CPIJ008336 (Culex pipiens)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 CpipJ_CPIJ008336 T252704_2.00 Broad (2016-May-1)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.852 0.852
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.852 0.852
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.815 0.815
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.815 0.815
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.815 0.815
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.815 0.815
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.815 0.815
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.815 0.815
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.815 0.815
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.815 0.815
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.815 0.815
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.815 0.815
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.815 0.815
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.815 0.815
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.815 0.815
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.815 0.815
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.815 0.815
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.815 0.815
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.815 0.815
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.815 0.815
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.815 0.815
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.815 0.815
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.815 0.815
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.815 0.815
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.815 0.815
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CpipJ_CPIJ008336-RA MADS box 266 292

Links

Other MADS box family TFs
Other Culex pipiens TFs

80 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACAC_0001093601 Angiostrongylus cantonensis ACAC_0001093601 I
ACOC_0000846801 Angiostrongylus costaricensis ACOC_0000846801 I
ACYPI003006 Acyrthosiphon pisum ACYPI003006 I
AGAP010201 Anopheles gambiae AGAP010201 I
Alligator_sinensis_CCG004455.1 Alligator sinensis Alligator_sinensis_CCG004455.1 I
ANCCAN_04319 Ancylostoma caninum ANCCAN_04319 I
ANCCEY_00577 Ancylostoma ceylanicum ANCCEY_00577 I
BGIBMGA010353 Bombyx mori BGIBMGA010353 I
CapteG45346 Capitella teleta CapteG45346 I
CBG10034 Caenorhabditis briggsae CBG10034 I
CBN22234 Caenorhabditis brenneri CBN22234 I
CGI_10026909 Crassostrea gigas CGI_10026909 I
CGOC_0000858101 Cylicostephanus goldi CGOC_0000858101 I
CJA09019 Caenorhabditis japonica CJA09019 I
Cmyd_10017689 Chelonia mydas Cmyd_10017689 I
CRE25281 Caenorhabditis remanei CRE25281 I
crp Drosophila melanogaster FBgn0001994 D
DAPPUDRAFT_303137 Daphnia pulex DAPPUDRAFT_303137 I
DICVIV_02775 Dictyocaulus viviparus DICVIV_02775 I
ENSAMEG00000002016 Ailuropoda melanoleuca ENSAMEG00000002016 I
ENSCING00000014406 Ciona intestinalis ENSCING00000014406 I
ENSCSAG00000009620 Chlorocebus sabaeus ENSCSAG00000009620 I
ENSCSAVG00000000333 Ciona savignyi ENSCSAVG00000000333 I
ENSFALG00000004331 Ficedula albicollis ENSFALG00000004331 I
ENSGMOG00000014930 Gadus morhua ENSGMOG00000014930 I
ENSGMOG00000015232 Gadus morhua ENSGMOG00000015232 I
ENSLACG00000000328 Latimeria chalumnae ENSLACG00000000328 I
ENSLOCG00000002626 Lepisosteus oculatus ENSLOCG00000002626 I
ENSMEUG00000000888 Macropus eugenii ENSMEUG00000000888 I
ENSMPUG00000015023 Mustela putorius furo ENSMPUG00000015023 I
ENSNLEG00000009797 Nomascus leucogenys ENSNLEG00000009797 I
ENSOARG00000003120 Ovis aries ENSOARG00000003120 I
ENSONIG00000005196 Oreochromis niloticus ENSONIG00000005196 I
ENSONIG00000016338 Oreochromis niloticus ENSONIG00000016338 I
ENSOPRG00000001061 Ochotona princeps ENSOPRG00000001061 I
ENSP00000204517 Macaca fascicularis ENSP00000204517 I
ENSP00000204517-D1 Bos grunniens ENSP00000204517-D1 I
ENSPANG00000010499 Papio anubis ENSPANG00000010499 I
ENSPFOG00000000836 Poecilia formosa ENSPFOG00000000836 I
ENSPFOG00000011355 Poecilia formosa ENSPFOG00000011355 I
ENSPPYG00000007054 Pongo abelii ENSPPYG00000007054 I
ENSPSIG00000009002 Pelodiscus sinensis ENSPSIG00000009002 I
ENSPVAG00000005418 Pteropus vampyrus ENSPVAG00000005418 I
ENSSHAG00000011487 Sarcophilus harrisii ENSSHAG00000011487 I
ENSSTOG00000028040 Ictidomys tridecemlineatus ENSSTOG00000028040 I
ENSXMAG00000004632 Xiphophorus maculatus ENSXMAG00000004632 I
ENSXMAG00000011968 Xiphophorus maculatus ENSXMAG00000011968 I
estExt_fgenesh2_pg.C_3260041 Branchiostoma floridae estExt_fgenesh2_pg.C_3260041 I
fgenesh2_pg.scaffold_326000054 Branchiostoma floridae fgenesh2_pg.scaffold_326000054 I
GA20511 Drosophila pseudoobscura FBgn0080505 I
GB48999 Apis mellifera GB48999 I
GD21926 Drosophila simulans FBgn0193342 I
GE19372 Drosophila yakuba FBgn0236717 I
GG24179 Drosophila erecta FBgn0116312 I
GH10096 Drosophila grimshawi FBgn0117577 I
GI14377 Drosophila mojavensis FBgn0137129 I
GJ16254 Drosophila virilis FBgn0203439 I
GK24289 Drosophila willistoni FBgn0226250 I
GL14101 Drosophila persimilis FBgn0151706 I
GM17917 Drosophila sechellia FBgn0172824 I
HCOI01121900 Haemonchus contortus HCOI01121900 I
hlh-11 Caenorhabditis elegans WBGene00001955 D
HMEL008759 Heliconius melpomene HMEL008759 I
HPBE_0002474001 Heligmosomoides bakeri HPBE_0002474001 I
HPLM_0001857601 Haemonchus placei HPLM_0001857601 I
KGM_15765 Danaus plexippus KGM_15765 I
L798_07621 Zootermopsis nevadensis L798_07621 I
LLOJ009485 Lutzomyia longipalpis LLOJ009485 I
MDOA012071 Musca domestica MDOA012071 I
Myotis_brandtii_TFAP4_10028039 Myotis brandtii Myotis_brandtii_TFAP4_10028039 I
NBR_0000263101 Nippostrongylus brasiliensis NBR_0000263101 I
NBR_0000299801 Nippostrongylus brasiliensis NBR_0000299801 I
NECAME_04511 Necator americanus NECAME_04511 I
NEMVEDRAFT_v1g112080 Nematostella vectensis NEMVEDRAFT_v1g112080 I
Ogr05167 Ophisaurus gracilis Ogr05167 I
PPA14541 Pristionchus pacificus PPA14541 I
Pvit_18996 Pogona vitticeps Pvit_18996 I
scaffold60-EXSNAP2012.12 Pristionchus exspectatus scaffold60-EXSNAP2012.12 I
SPU_003179 Strongylocentrotus purpuratus SPU_003179 I
SVUK_0000451101 Strongylus vulgaris SVUK_0000451101 I
TCLT_0000678201 Thelazia callipaeda TCLT_0000678201 I
TELCIR_07248 Teladorsagia circumcincta TELCIR_07248 I
TELCIR_11314 Teladorsagia circumcincta TELCIR_11314 I
TFAP4 Anolis carolinensis ENSACAG00000016352 I
TFAP4 Bos taurus ENSBTAG00000033174 I
TFAP4 Canis familiaris ENSCAFG00000019231 I
TFAP4 Callithrix jacchus ENSCJAG00000019756 I
TFAP4 Cavia porcellus ENSCPOG00000004174 I
tfap4 Danio rerio ENSDARG00000103923 I
TFAP4 Dasypus novemcinctus ENSDNOG00000039193 I
Tfap4 Dipodomys ordii ENSDORG00000004656 I
TFAP4 Equus caballus ENSECAG00000022311 I
TFAP4 Erinaceus europaeus ENSEEUG00000006004 I
TFAP4 Echinops telfairi ENSETEG00000008634 I
TFAP4 Felis catus ENSFCAG00000011227 I
TFAP4 Homo sapiens ENSG00000090447 D
tfap4 Gasterosteus aculeatus ENSGACG00000018768 I
TFAP4 Gorilla gorilla ENSGGOG00000000451 I
TFAP4 Loxodonta africana ENSLAFG00000022341 I
TFAP4 Meleagris gallopavo ENSMGAG00000009411 I
TFAP4 Myotis lucifugus ENSMLUG00000005725 I
TFAP4 Monodelphis domestica ENSMODG00000016377 I
Tfap4 Mus musculus ENSMUSG00000005718 D
TFAP4 Ornithorhynchus anatinus ENSOANG00000019858 I
TFAP4 Oryctolagus cuniculus ENSOCUG00000024550 I
TFAP4 Otolemur garnettii ENSOGAG00000008955 I
tfap4 Oryzias latipes ENSORLG00000008286 I
tfap4 Oryzias latipes ENSORLG00000015050 I
TFAP4 Procavia capensis ENSPCAG00000011134 I
TFAP4 Pan troglodytes ENSPTRG00000007713 I
Tfap4 Rattus norvegicus ENSRNOG00000005227 I
TFAP4 Tupaia belangeri ENSTBEG00000014089 I
tfap4 Tetraodon nigroviridis ENSTNIG00000002015 I
tfap4 Tetraodon nigroviridis ENSTNIG00000009740 I
tfap4 Tetraodon nigroviridis ENSTNIG00000014095 I
tfap4 Takifugu rubripes ENSTRUG00000006111 I
tfap4 Takifugu rubripes ENSTRUG00000013344 I
TFAP4 Tursiops truncatus ENSTTRG00000002710 I
TFAP4 Vicugna pacos ENSVPAG00000008001 I
tfap4 Xenopus tropicalis XB-GENE-999265 I