ARB_05322 (Arthroderma benhamiae)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 ARB_05322 T252832_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SMP1
M01557_2.00 		Saccharomyces cerevisiae
TTAATAAA
TTTATTAA		 PBM
Zhu et al.(2009)
Smp1 		0.729 0.729
SMP1
M08587_2.00 		Saccharomyces cerevisiae
BNDBMYWYAATTRWRNNWVNN
NNBWNNYWYAATTRWRKVHNV		 Misc
DeBoer et al.(2011)
YBR182C_864 		0.729 0.729
RLM1
M08590_2.00 		Saccharomyces cerevisiae
NTAWWWWTAG
CTAWWWWTAN		 Misc
DeBoer et al.(2011)
YPL089C_419 		0.729 0.729
RLM1
M08459_2.00 		Saccharomyces cerevisiae
NDWTCTAWWWATAGMYHN
NDRKCTATWWWTAGAWHN		 COMPILED
Mathelier et al.(2014)
MA0369.1 		0.729 0.729
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EFE36383 MADS box 10 57

Links

Other MADS box family TFs
Other Arthroderma benhamiae TFs

229 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA024146 Oryza indica BGIOSGA024146 N 0.000
OB07G23510 Oryza brachyantha OB07G23510 N 0.000
OBART07G17630 Oryza barthii OBART07G17630 N 0.000
OGLUM07G17270 Oryza glumaepatula OGLUM07G17270 N 0.000
OLONG_014592 Oryza longistaminata OLONG_014592 N 0.000
OMERI07G14510 Oryza meridionalis OMERI07G14510 N 0.000
ONIVA07G15940 Oryza nivara ONIVA07G15940 N 0.000
OPUNC07G16420 Oryza punctata OPUNC07G16420 N 0.000
ORGLA07G0141300 Oryza glaberrima ORGLA07G0141300 N 0.000
ORUFI07G18300 Oryza rufipogon ORUFI07G18300 N 0.000
OS07G0543000 Oryza sativa OS07G0543000 N 0.000
Pavir.Ba00731 Panicum virgatum Pavir.Ba00731 N 0.000
Pavir.J35704 Panicum virgatum Pavir.J35704 N 0.000
PGSC0003DMG400021717 Solanum tuberosum PGSC0003DMG400021717 N 0.000
Sb02g035580 Sorghum bicolor Sb02g035580 N 0.000
Si030877m.g Setaria italica Si030877m.g N 0.000
Solyc02g079970.2 Solanum lycopersicum Solyc02g079970.2 N 0.000