Bra025685 (Brassica rapa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bra025685 T253324_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL65
M10901_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL65_01 		0.851 0.851
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra025685.1-P MADS box 10 56

Links

Other MADS box family TFs
Other Brassica rapa TFs

109 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R011464 Calypte anna Aan_R011464 N 0.000
Alligator_sinensis_CCG016667.1 Alligator sinensis Alligator_sinensis_CCG016667.1 N 0.000
Cmyd_10010458 Chelonia mydas Cmyd_10010458 N 0.000
ENSAPLG00000014876 Anas platyrhynchos ENSAPLG00000014876 N 0.000
ENSBTAP00000020376-D1 Bos grunniens ENSBTAP00000020376-D1 N 0.000
ENSFALG00000012590 Ficedula albicollis ENSFALG00000012590 N 0.000
ENSLACG00000008926 Latimeria chalumnae ENSLACG00000008926 N 0.000
ENSLOCG00000017240 Lepisosteus oculatus ENSLOCG00000017240 N 0.000
ENSMPUG00000013360 Mustela putorius furo ENSMPUG00000013360 N 0.000
ENSNLEG00000004772 Nomascus leucogenys ENSNLEG00000004772 N 0.000
ENSOARG00000003358 Ovis aries ENSOARG00000003358 N 0.000
ENSP00000362013 Macaca fascicularis ENSP00000362013 N 0.000
ENSPANG00000009451 Papio anubis ENSPANG00000009451 N 0.000
ENSPPYG00000016614 Pongo abelii ENSPPYG00000016614 N 0.000
ENSPSIG00000009755 Pelodiscus sinensis ENSPSIG00000009755 N 0.000
ENSSHAG00000004599 Sarcophilus harrisii ENSSHAG00000004599 N 0.000
ENSSTOG00000022996 Ictidomys tridecemlineatus ENSSTOG00000022996 N 0.000
ENSTBEG00000012133 Tupaia belangeri ENSTBEG00000012133 N 0.000
ENSTSYG00000003874 Tarsius syrichta ENSTSYG00000003874 N 0.000
Myotis_brandtii_Trerf1_10015386 Myotis brandtii Myotis_brandtii_Trerf1_10015386 N 0.000
Ogr07462 Ophisaurus gracilis Ogr07462 N 0.000
Pvit_13408 Pogona vitticeps Pvit_13408 N 0.000
TRERF1 Taeniopygia guttata ENSTGUG00000003250 N 0.000
trerf1 Xenopus tropicalis XB-GENE-940630 N 0.000
TRERF1 Tursiops truncatus ENSTTRG00000014065 N 0.000
TRERF1 Sus scrofa ENSSSCG00000001639 N 0.000
TRERF1 Anolis carolinensis ENSACAG00000001080 N 0.000
TRERF1 Gallus gallus ENSGALG00000009896 N 0.000
TRERF1 Bos taurus ENSBTAG00000015321 N 0.000
TRERF1 Canis familiaris ENSCAFG00000001642 N 0.000
TRERF1 Choloepus hoffmanni ENSCHOG00000006120 N 0.000
TRERF1 Callithrix jacchus ENSCJAG00000004347 N 0.000
TRERF1 Cavia porcellus ENSCPOG00000015717 N 0.000
TRERF1 Equus caballus ENSECAG00000016971 N 0.000
TRERF1 Felis catus ENSFCAG00000011210 N 0.000
TRERF1 Homo sapiens ENSG00000124496 N 0.000
Trerf1 Rattus norvegicus ENSRNOG00000022598 N 0.000
TRERF1 Gorilla gorilla ENSGGOG00000012813 N 0.000
TRERF1 Loxodonta africana ENSLAFG00000007825 N 0.000
TRERF1 Myotis lucifugus ENSMLUG00000016748 N 0.000
TRERF1 Monodelphis domestica ENSMODG00000019042 N 0.000
TRERF1 Ornithorhynchus anatinus ENSOANG00000008467 N 0.000
TRERF1 Otolemur garnettii ENSOGAG00000025610 N 0.000
TRERF1 Pteropus vampyrus ENSPVAG00000007626 N 0.000