fgenesh2_kg.8__2543__AT5G65050.2 (Arabidopsis lyrata)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 fgenesh2_kg.8__2543__AT5G65050.2 T254044_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FLC
M06990_2.00 		Arabidopsis thaliana
WWDMYNDWWWWGGAAASW
WSTTTCCWWWWHNRKHWW		 Dap-seq
OMalley et al.(2016)
AGL25_col_a 		0.851 0.851
FLC
M06991_2.00 		Arabidopsis thaliana
WCYHAAAAWGGAAAS
STTTCCWTTTTDRGW		 Dap-seq
OMalley et al.(2016)
AGL25_colamp_a 		0.851 0.851
AGL27
M08145_2.00 		Arabidopsis thaliana
MCMAAAATRGAAAB
VTTTCYATTTTKGK		 ChIP-seq
Mathelier et al.(2014)
MA1012.1 		0.851 0.851
FLC
M08147_2.00 		Arabidopsis thaliana
NNWWDCYVAAAWWRGAAAVHH
DDBTTTCYWWTTTBRGHWWNN		 ChIP-seq
Mathelier et al.(2014)
MA0558.1 		0.851 0.851
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.8__2543__AT5G65050.2 MADS box 10 56

Links

Other MADS box family TFs
Other Arabidopsis lyrata TFs

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL018187 Aedes aegypti AAEL018187 I 0.000
AALB009566 Anopheles albimanus AALB009566 I 0.000
Aan_R003515 Calypte anna Aan_R003515 I 0.000
Aan_R010366 Calypte anna Aan_R010366 I 0.000
AARA009846 Anopheles arabiensis AARA009846 I 0.000
AATE005421 Anopheles atroparvus AATE005421 I 0.000
ACUA002164 Anopheles culicifacies ACUA002164 I 0.000
ACYPI21591 Acyrthosiphon pisum ACYPI21591 I 0.000
ADIR003350 Anopheles dirus ADIR003350 I 0.000
AEPI007299 Anopheles epiroticus AEPI007299 I 0.000
AFAF001586 Anopheles farauti AFAF001586 I 0.000
Afo_R000794 Aptenodytes forsteri Afo_R000794 I 0.000
Afo_R013485 Aptenodytes forsteri Afo_R013485 I 0.000
AFUN011236 Anopheles funestus AFUN011236 I 0.000
AGAP003940 Anopheles gambiae AGAP003940 I 0.000
Alligator_sinensis_CCG002668.1 Alligator sinensis Alligator_sinensis_CCG002668.1 I 0.000
Alligator_sinensis_CCG016523.1 Alligator sinensis Alligator_sinensis_CCG016523.1 I 0.000
AMAM019487 Anopheles maculatus AMAM019487 I 0.000
AMIN000296 Anopheles minimus AMIN000296 I 0.000
Aqu1.218417 Amphimedon queenslandica Aqu1.218417 I 0.000
Aqu1.221965 Amphimedon queenslandica Aqu1.221965 I 0.000
Aqu1.221966 Amphimedon queenslandica Aqu1.221966 I 0.000
AQUA009136 Anopheles quadriannulatus AQUA009136 I 0.000
ASIS014250 Anopheles sinensis ASIS014250 I 0.000
ASTEI00952 Anopheles stephensi ASTEI00952 I 0.000
BGIBMGA000445 Bombyx mori BGIBMGA000445 I 0.000
BGLB014390 Biomphalaria glabrata BGLB014390 I 0.000
Brh_R000146 Buceros rhinoceros Brh_R000146 I 0.000
Brh_R003679 Buceros rhinoceros Brh_R003679 I 0.000
Cflo_09362--XP_394749.3_APIME Camponotus floridanus Cflo_09362--XP_394749.3_APIME I 0.000
CGI_10014633 Crassostrea gigas CGI_10014633 I 0.000
CLEC011741 Cimex lectularius CLEC011741 I 0.000
Cmyd_10016296 Chelonia mydas Cmyd_10016296 I 0.000
CPIJ001711 Culex quinquefasciatus CPIJ001711 I 0.000
CpipJ_CPIJ001711 Culex pipiens CpipJ_CPIJ001711 I 0.000
DAPPUDRAFT_51691 Daphnia pulex DAPPUDRAFT_51691 I 0.000
ENSACAG00000011719 Anolis carolinensis ENSACAG00000011719 I 0.000
ENSACAG00000012187 Anolis carolinensis ENSACAG00000012187 I 0.000
ENSAMEG00000004934 Ailuropoda melanoleuca ENSAMEG00000004934 I 0.000
ENSAMEG00000016548 Ailuropoda melanoleuca ENSAMEG00000016548 I 0.000
ENSAMXG00000006838 Astyanax mexicanus ENSAMXG00000006838 I 0.000
ENSAMXG00000017753 Astyanax mexicanus ENSAMXG00000017753 I 0.000
ENSAPLG00000002586 Anas platyrhynchos ENSAPLG00000002586 I 0.000
ENSAPLG00000014618 Anas platyrhynchos ENSAPLG00000014618 I 0.000
ENSBTAP00000014397-D1 Bos grunniens ENSBTAP00000014397-D1 I 0.000
ENSBTAP00000017410-D1 Bos grunniens ENSBTAP00000017410-D1 I 0.000
ENSCSAG00000002781 Chlorocebus sabaeus ENSCSAG00000002781 I 0.000
ENSCSAG00000007275 Chlorocebus sabaeus ENSCSAG00000007275 I 0.000
ENSCSAVG00000004000 Ciona savignyi ENSCSAVG00000004000 I 0.000
ENSFALG00000006460 Ficedula albicollis ENSFALG00000006460 I 0.000
ENSFALG00000008767 Ficedula albicollis ENSFALG00000008767 I 0.000
ENSGALG00000003654 Gallus gallus ENSGALG00000003654 I 0.000
ENSGMOG00000002294 Gadus morhua ENSGMOG00000002294 I 0.000
ENSGMOG00000012022 Gadus morhua ENSGMOG00000012022 I 0.000
ENSLACG00000011453 Latimeria chalumnae ENSLACG00000011453 I 0.000
ENSLAFG00000031464 Loxodonta africana ENSLAFG00000031464 I 0.000
ENSLOCG00000000236 Lepisosteus oculatus ENSLOCG00000000236 I 0.000
ENSLOCG00000004428 Lepisosteus oculatus ENSLOCG00000004428 I 0.000
ENSLOCG00000005491 Lepisosteus oculatus ENSLOCG00000005491 I 0.000
ENSMEUG00000015975 Macropus eugenii ENSMEUG00000015975 I 0.000
ENSMMUG00000020375 Macaca mulatta ENSMMUG00000020375 I 0.000
ENSMPUG00000003606 Mustela putorius furo ENSMPUG00000003606 I 0.000
ENSMPUG00000014265 Mustela putorius furo ENSMPUG00000014265 I 0.000
ENSNLEG00000001602 Nomascus leucogenys ENSNLEG00000001602 I 0.000
ENSNLEG00000002304 Nomascus leucogenys ENSNLEG00000002304 I 0.000
ENSOANG00000014185 Ornithorhynchus anatinus ENSOANG00000014185 I 0.000
ENSOARG00000016041 Ovis aries ENSOARG00000016041 I 0.000
ENSOARG00000018638 Ovis aries ENSOARG00000018638 I 0.000
ENSONIG00000008179 Oreochromis niloticus ENSONIG00000008179 I 0.000
ENSONIG00000013504 Oreochromis niloticus ENSONIG00000013504 I 0.000
ENSORLG00000008113 Oryzias latipes ENSORLG00000008113 I 0.000
ENSP00000226247 Macaca fascicularis ENSP00000226247 I 0.000
ENSP00000299162 Macaca fascicularis ENSP00000299162 I 0.000
ENSPANG00000019523 Papio anubis ENSPANG00000019523 I 0.000
ENSPANG00000023451 Papio anubis ENSPANG00000023451 I 0.000
ENSPFOG00000006570 Poecilia formosa ENSPFOG00000006570 I 0.000
ENSPFOG00000013538 Poecilia formosa ENSPFOG00000013538 I 0.000
ENSPMAG00000004307 Petromyzon marinus ENSPMAG00000004307 I 0.000
ENSPPYG00000004931 Pongo abelii ENSPPYG00000004931 I 0.000
ENSPPYG00000008096 Pongo abelii ENSPPYG00000008096 I 0.000
ENSPSIG00000004744 Pelodiscus sinensis ENSPSIG00000004744 I 0.000
ENSPSIG00000009226 Pelodiscus sinensis ENSPSIG00000009226 I 0.000
ENSSARG00000006773 Sorex araneus ENSSARG00000006773 I 0.000
ENSSHAG00000013650 Sarcophilus harrisii ENSSHAG00000013650 I 0.000
ENSSSCG00000009936 Sus scrofa ENSSSCG00000009936 I 0.000
ENSSSCG00000022921 Sus scrofa ENSSSCG00000022921 I 0.000
ENSSTOG00000028800 Ictidomys tridecemlineatus ENSSTOG00000028800 I 0.000
ENSSTOG00000028981 Ictidomys tridecemlineatus ENSSTOG00000028981 I 0.000
ENSXMAG00000007879 Xiphophorus maculatus ENSXMAG00000007879 I 0.000
ENSXMAG00000011786 Xiphophorus maculatus ENSXMAG00000011786 I 0.000
estExt_fgenesh2_pg.C_1860025 Branchiostoma floridae estExt_fgenesh2_pg.C_1860025 I 0.000
e_gw.490.9.1 Branchiostoma floridae e_gw.490.9.1 I 0.000
fgenesh2_pg.scaffold_129000050 Branchiostoma floridae fgenesh2_pg.scaffold_129000050 I 0.000
FOXN1 Bos taurus ENSBTAG00000013095 I 0.000
FOXN1 Canis familiaris ENSCAFG00000018709 I 0.000
FOXN1 Callithrix jacchus ENSCJAG00000012705 I 0.000
FOXN1 Cavia porcellus ENSCPOG00000009810 I 0.000
foxn1 Danio rerio ENSDARG00000011879 I 0.000
FOXN1 Dasypus novemcinctus ENSDNOG00000006144 I 0.000
Foxn1 Dipodomys ordii ENSDORG00000015116 I 0.000
FOXN1 Equus caballus ENSECAG00000010691 I 0.000
FOXN1 Erinaceus europaeus ENSEEUG00000006629 I 0.000
FOXN1 Echinops telfairi ENSETEG00000015002 I 0.000
FOXN1 Felis catus ENSFCAG00000008268 I 0.000
FOXN1 Homo sapiens ENSG00000109101 D 0.000
foxn1 Gasterosteus aculeatus ENSGACG00000008619 I 0.000
FOXN1 Gorilla gorilla ENSGGOG00000009682 I 0.000
FOXN1 Loxodonta africana ENSLAFG00000014501 I 0.000
FOXN1 Meleagris gallopavo ENSMGAG00000005734 I 0.000
FOXN1 Microcebus murinus ENSMICG00000016795 I 0.000
FOXN1 Myotis lucifugus ENSMLUG00000012353 I 0.000
FOXN1 Macaca mulatta ENSMMUG00000021975 I 0.000
FOXN1 Monodelphis domestica ENSMODG00000019251 I 0.000
Foxn1 Mus musculus ENSMUSG00000002057 D 0.000
FOXN1 Oryctolagus cuniculus ENSOCUG00000013779 I 0.000
FOXN1 Otolemur garnettii ENSOGAG00000007093 I 0.000
FOXN1 Ochotona princeps ENSOPRG00000012389 I 0.000
FOXN1 Procavia capensis ENSPCAG00000010796 I 0.000
FOXN1 Pan troglodytes ENSPTRG00000008920 I 0.000
FOXN1 Pteropus vampyrus ENSPVAG00000002892 I 0.000
Foxn1 Rattus norvegicus ENSRNOG00000010870 I 0.000
FOXN1 Tupaia belangeri ENSTBEG00000007940 I 0.000
FOXN1 Taeniopygia guttata ENSTGUG00000005999 I 0.000
FOXN1 Tursiops truncatus ENSTTRG00000004014 I 0.000
FOXN4 Bos taurus ENSBTAG00000010847 I 0.000
FOXN4 Canis familiaris ENSCAFG00000010915 I 0.000
FOXN4 Callithrix jacchus ENSCJAG00000010010 I 0.000
FOXN4 Cavia porcellus ENSCPOG00000000942 I 0.000
foxn4 Danio rerio ENSDARG00000010591 I 0.000
FOXN4 Dasypus novemcinctus ENSDNOG00000015606 I 0.000
FOXN4 Felis catus ENSFCAG00000003124 I 0.000
FOXN4 Homo sapiens ENSG00000139445 I 0.000
foxn4 Gasterosteus aculeatus ENSGACG00000009215 I 0.000
FoxN4 Gallus gallus ENSGALG00000005062 I 0.000
FOXN4 Gorilla gorilla ENSGGOG00000009323 I 0.000
FOXN4 Meleagris gallopavo ENSMGAG00000006116 I 0.000
Foxn4 Mus musculus ENSMUSG00000042002 D 0.000
FOXN4 Ornithorhynchus anatinus ENSOANG00000008810 I 0.000
FOXN4 Oryctolagus cuniculus ENSOCUG00000005185 I 0.000
FOXN4 Otolemur garnettii ENSOGAG00000007455 I 0.000
FOXN4 Ochotona princeps ENSOPRG00000006537 I 0.000
FOXN4 Oryzias latipes ENSORLG00000007587 I 0.000
FOXN4 Pan troglodytes ENSPTRG00000005421 I 0.000
FOXN4 Pteropus vampyrus ENSPVAG00000007463 I 0.000
Foxn4 Rattus norvegicus ENSRNOG00000000691 I 0.000
FOXN4 Tupaia belangeri ENSTBEG00000005233 I 0.000
FOXN4 Taeniopygia guttata ENSTGUG00000007235 I 0.000
foxn4 Tetraodon nigroviridis ENSTNIG00000015894 I 0.000
foxn4 Takifugu rubripes ENSTRUG00000015456 I 0.000
FOXN4 Tursiops truncatus ENSTTRG00000006397 I 0.000
foxn4 Xenopus tropicalis XB-GENE-981086 I 0.000
foxn4.S Xenopus laevis XB-GENE-981090 I 0.000
GA17887 Drosophila pseudoobscura FBgn0077896 I 0.000
GA25156 Drosophila pseudoobscura FBgn0246538 I 0.000
GB41890 Apis mellifera GB41890 I 0.000
GD18690 Drosophila simulans FBgn0190211 I 0.000
GE26032 Drosophila yakuba FBgn0243075 I 0.000
GF17528 Drosophila ananassae FBgn0094546 I 0.000
Gfo_R003176 Geospiza fortis Gfo_R003176 I 0.000
Gfo_R011440 Geospiza fortis Gfo_R011440 I 0.000
GG17529 Drosophila erecta FBgn0109754 I 0.000
GH19127 Drosophila grimshawi FBgn0126594 I 0.000
GI23584 Drosophila mojavensis FBgn0146310 I 0.000
GJ23559 Drosophila virilis FBgn0210656 I 0.000
GK11545 Drosophila willistoni FBgn0213556 I 0.000
GM23879 Drosophila sechellia FBgn0178744 I 0.000
gw.612.6.1 Branchiostoma floridae gw.612.6.1 I 0.000
HHAL008872-PA Halyomorpha halys HHAL008872-PA I 0.000
ISCW008179 Ixodes scapularis ISCW008179 I 0.000
jumu Drosophila melanogaster FBgn0015396 D 0.000
KGM_21935 Danaus plexippus KGM_21935 I 0.000
L798_10143 Zootermopsis nevadensis L798_10143 I 0.000
LCUP000947 Lucilia cuprina LCUP000947 I 0.000
LDEC004155 Leptinotarsa decemlineata LDEC004155 I 0.000
LLOJ002533 Lutzomyia longipalpis LLOJ002533 I 0.000
LotgiG77849 Lottia gigantea LotgiG77849 I 0.000
MDOA003678 Musca domestica MDOA003678 I 0.000
Myotis_brandtii_Foxn1_10015981 Myotis brandtii Myotis_brandtii_Foxn1_10015981 I 0.000
Myotis_brandtii_FOXN4_10027419 Myotis brandtii Myotis_brandtii_FOXN4_10027419 I 0.000
NEMVEDRAFT_v1g121754 Nematostella vectensis NEMVEDRAFT_v1g121754 I 0.000
Ogr03484 Ophisaurus gracilis Ogr03484 I 0.000
Ogr14394 Ophisaurus gracilis Ogr14394 I 0.000
PHUM047550 Pediculus humanus PHUM047550 I 0.000
PPAI007934 Phlebotomus papatasi PPAI007934 I 0.000
Pvit_00420 Pogona vitticeps Pvit_00420 I 0.000
Pvit_02436 Pogona vitticeps Pvit_02436 I 0.000
RPRC003475 Rhodnius prolixus RPRC003475 I 0.000
Sakowv30034418m.g Saccoglossus kowalevskii Sakowv30034418m.g I 0.000
SINV24088 Solenopsis invicta SINV24088 I 0.000
SMAR013946 Strigamia maritima SMAR013946 I 0.000
Tal_R000657 Tyto alba Tal_R000657 I 0.000
Tal_R011069 Tyto alba Tal_R011069 I 0.000
TC012532 Tribolium castaneum TC012532 I 0.000
TriadG51743 Trichoplax adhaerens TriadG51743 I 0.000
XP_002166457.1 Hydra magnipapillata XP_002166457.1 I 0.000
XP_002937190 Xenopus tropicalis XP_002937190 I 0.000
YQE_08440 Dendroctonus ponderosae YQE_08440 I 0.000