SKUD_178506 (Saccharomyces kudriavzevii)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 SKUD_178506 T256272_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SMP1
M01557_2.00 		Saccharomyces cerevisiae
TTAATAAA
TTTATTAA		 PBM
Zhu et al.(2009)
Smp1 		1.000 1.000
SMP1
M08587_2.00 		Saccharomyces cerevisiae
BNDBMYWYAATTRWRNNWVNN
NNBWNNYWYAATTRWRKVHNV		 Misc
DeBoer et al.(2011)
YBR182C_864 		1.000 1.000
RLM1
M08590_2.00 		Saccharomyces cerevisiae
NTAWWWWTAG
CTAWWWWTAN		 Misc
DeBoer et al.(2011)
YPL089C_419 		0.917 0.917
RLM1
M08459_2.00 		Saccharomyces cerevisiae
NDWTCTAWWWATAGMYHN
NDRKCTATWWWTAGAWHN		 COMPILED
Mathelier et al.(2014)
MA0369.1 		0.917 0.917
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EJT42543 MADS box 10 57

Links

Other MADS box family TFs
Other Saccharomyces kudriavzevii TFs

198 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACAC_0000570501 Angiostrongylus cantonensis ACAC_0000570501 N
ASIM_0000640901 Anisakis simplex ASIM_0000640901 N
ASIM_0000652001 Anisakis simplex ASIM_0000652001 N
BXY_0600000 Bursaphelenchus xylophilus BXY_0600000 N
DME_0001058101 Dracunculus medinensis DME_0001058101 N
GPUH_0002165401 Gongylonema pulchrum GPUH_0002165401 N
L596_g18998 Steinernema carpocapsae L596_g18998 N
L889_g16824 Steinernema feltiae L889_g16824 N
L892_g28062 Steinernema scapterisci L892_g28062 N
L893_g8502 Steinernema glaseri L893_g8502 N
PPA24751 Pristionchus pacificus PPA24751 N
RSKR_0000923100 Rhabditophanes kr3021 RSKR_0000923100 N