SLOPH_1335 (Spraguea lophii)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 SLOPH_1335 T256274_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.750 0.750
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.750 0.750
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.750 0.750
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.750 0.750
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.750 0.750
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.750 0.750
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.750 0.750
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.750 0.750
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.750 0.750
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.750 0.750
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.750 0.750
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.750 0.750
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.750 0.750
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.750 0.750
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.750 0.750
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.750 0.750
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.750 0.750
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.750 0.750
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.750 0.750
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.750 0.750
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.750 0.750
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.750 0.750
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.750 0.750
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.729 0.729
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.729 0.729
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.729 0.729
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.729 0.729
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.729 0.729
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.729 0.729
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.708 0.708
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EPR80121 MADS box 133 180

Links

Other MADS box family TFs
Other Spraguea lophii TFs

449 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30005.m001261 Ricinus communis 30005.m001261 N
Aquca_108_00051 Aquilegia coerulea Aquca_108_00051 N
BGIOSGA014805 Oryza indica BGIOSGA014805 N
Bo1g147290 Brassica oleracea Bo1g147290 N
Bo3g061340 Brassica oleracea Bo3g061340 N
Bra001258 Brassica rapa Bra001258 N
Bra029658 Brassica rapa Bra029658 N
Bra040015 Brassica rapa Bra040015 N
cassava24109.valid.m1 Manihot esculenta cassava24109.valid.m1 N
Ciclev10016354m.g Citrus clementina Ciclev10016354m.g N
Ciclev10021850m.g Citrus clementina Ciclev10021850m.g N
F775_32546 Aegilops tauschii F775_32546 N
Gorai.004G060500 Gossypium raimondii Gorai.004G060500 N
Gorai.007G162200 Gossypium raimondii Gorai.007G162200 N
Gorai.011G138900 Gossypium raimondii Gorai.011G138900 N
Gorai.N001000 Gossypium raimondii Gorai.N001000 N
GRMZM2G053557 Zea mays GRMZM2G053557 N
GSMUA_Achr3G19260_001 Musa acuminata GSMUA_Achr3G19260_001 N
GSMUA_Achr6G28720_001 Musa acuminata GSMUA_Achr6G28720_001 N
GSMUA_Achr9G08210_001 Musa acuminata GSMUA_Achr9G08210_001 N
LPERR04G13890 Leersia perrieri LPERR04G13890 N
Lus10025581.g Linum usitatissimum Lus10025581.g N
Lus10025582.g Linum usitatissimum Lus10025582.g N
Lus10027045.g Linum usitatissimum Lus10027045.g N
mgf000871m Mimulus guttatus mgf000871m N
mgf025428m Mimulus guttatus mgf025428m N
MTR_2g099155 Medicago truncatula MTR_2g099155 N
OBART04G17310 Oryza barthii OBART04G17310 N
OGLUM04G17350 Oryza glumaepatula OGLUM04G17350 N
OLONG_009317 Oryza longistaminata OLONG_009317 N
OMERI04G14610 Oryza meridionalis OMERI04G14610 N
ONIVA04G15620 Oryza nivara ONIVA04G15620 N
OPUNC04G15120 Oryza punctata OPUNC04G15120 N
orange1.1g024388m.g Citrus sinensis orange1.1g024388m.g N
orange1.1g025458m.g Citrus sinensis orange1.1g025458m.g N
ORGLA04G0144300 Oryza glaberrima ORGLA04G0144300 N
ORUFI04G18740 Oryza rufipogon ORUFI04G18740 N
Pavir.Ga01503 Panicum virgatum Pavir.Ga01503 N
Pavir.J08977 Panicum virgatum Pavir.J08977 N
PGSC0003DMG400020996 Solanum tuberosum PGSC0003DMG400020996 N
POPTR_0014s17210 Populus trichocarpa POPTR_0014s17210 N
Sb06g021360 Sorghum bicolor Sb06g021360 N
Si010917m.g Setaria italica Si010917m.g N
Solyc08g013980.2 Solanum lycopersicum Solyc08g013980.2 N
Solyc09g020000.2 Solanum lycopersicum Solyc09g020000.2 N
TCM_002550 Theobroma cacao TCM_002550 N
TCM_019960 Theobroma cacao TCM_019960 N
TCM_019968 Theobroma cacao TCM_019968 N
Thhalv10021333m.g Eutrema salsugineum Thhalv10021333m.g N
Traes_2AL_6990211D0 Triticum aestivum Traes_2AL_6990211D0 N
Traes_2BL_7B5109B55 Triticum aestivum Traes_2BL_7B5109B55 N
Traes_2DL_B72450387 Triticum aestivum Traes_2DL_B72450387 N