29838.m001690 (Ricinus communis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 29838.m001690 T257151_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.812 0.812
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.812 0.812
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.812 0.812
squamosa
M02697_2.00 		Antirrhinum majus
MYAWAWAWRGHAAN
NTTDCYWTWTWTRK		 SELEX
Mathelier et al.(2014)
MA0082.1 		0.729 0.729
Q38742_ANTMA
M11000_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SQUA_01 		0.729 0.729
AGL15
M06992_2.00 		Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN
NTTTCYWHWTTDGGWAANW		 Dap-seq
OMalley et al.(2016)
AGL15_col_a 		0.708 0.708
AGL15
M06993_2.00 		Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH
DDNTTTCYHHWTTDGGWAANH		 Dap-seq
OMalley et al.(2016)
AGL15_colamp_a 		0.708 0.708
AGL3
M02693_2.00 		Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN
NNWNCYWWWWWTGGNWHB		 SELEX
Mathelier et al.(2014)
MA0001.2 		0.708 0.708
AG
M02695_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHADN
NHTDCCHNWTWWGGWAAD		 SELEX
Mathelier et al.(2014)
MA0005.2 		0.708 0.708
AP1
M08144_2.00 		Arabidopsis thaliana
MYAAAAAWRGAAA
TTTCYWTTTTTRK		 ChIP-seq
Mathelier et al.(2014)
MA0940.1 		0.708 0.708
AG
M10923_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHWDN
NHTDCCHNWTWWGGWAAD		 Transfac
Matys et al.(2006)
P$AG_01 		0.708 0.708
AG
M10924_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_02 		0.708 0.708
AG
M10925_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_03 		0.708 0.708
AG_TOBAC
M10995_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG1_02 		0.708 0.708
AGL15
M10927_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_01 		0.708 0.708
AGL15
M10928_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_02 		0.708 0.708
AGL3
M10908_2.00 		Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN
NNWNCYWWWWWTGGNWHB		 Transfac
Matys et al.(2006)
P$AGL3_01 		0.708 0.708
AGL3
M10909_2.00 		Arabidopsis thaliana
NDTNCCAWWWWTRGHWNN
NNWDCYAWWWWTGGNAHN		 Transfac
Matys et al.(2006)
P$AGL3_02 		0.708 0.708
AGL3
M10910_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL3_03 		0.708 0.708
AG
M10926_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_Q2 		0.708 0.708
A1YJE4_HORVD
M10900_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM10_01 		0.708 0.708
Q40882_PETHY
M11003_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP11_01 		0.708 0.708
Q08711_PETHY
M10999_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP6_01 		0.708 0.708
O82698_MALDO
M11021_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS10_01 		0.708 0.708
Q8VWZ3_MALDO
M11025_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS14_02 		0.708 0.708
Q8VWZ2_MALDO
M11024_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS15_02 		0.708 0.708
MADS3_ORYSJ
M10963_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_01 		0.708 0.708
AG_PETHY
M10994_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_02 		0.708 0.708
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.708 0.708
AP1
M10905_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADSA_Q2 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
29838.m001690 MADS box 10 57

Links

Other MADS box family TFs
Other Ricinus communis TFs

601 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AALB003620 Anopheles albimanus AALB003620 N
AATE015248 Anopheles atroparvus AATE015248 N
ACEP14712 Atta cephalotes ACEP14712 N
ACYPI007360 Acyrthosiphon pisum ACYPI007360 N
ACYPI061631 Acyrthosiphon pisum ACYPI061631 N
AFAF010529 Anopheles farauti AFAF010529 N
AFAF019448 Anopheles farauti AFAF019448 N
Afo_R004423 Aptenodytes forsteri Afo_R004423 N
Afo_R004424 Aptenodytes forsteri Afo_R004424 N
AMAM017394 Anopheles maculatus AMAM017394 N
AMEM018396 Anopheles merus AMEM018396 N
ANCCEY_11186 Ancylostoma ceylanicum ANCCEY_11186 N
ANCDUO_22746 Ancylostoma duodenale ANCDUO_22746 N
ASTEI04298 Anopheles stephensi ASTEI04298 N
BGIBMGA000762 Bombyx mori BGIBMGA000762 N
Brh_R009090 Buceros rhinoceros Brh_R009090 N
Brh_R009091 Buceros rhinoceros Brh_R009091 N
CBG11788 Caenorhabditis briggsae CBG11788 N
CBG27683 Caenorhabditis briggsae CBG27683 N
CGI_10013606 Crassostrea gigas CGI_10013606 N
CGOC_0001416801 Cylicostephanus goldi CGOC_0001416801 N
CLEC007188 Cimex lectularius CLEC007188 N
Cmyd_10006636 Chelonia mydas Cmyd_10006636 N
Cmyd_10018206 Chelonia mydas Cmyd_10018206 N
D915_09728 Fasciola hepatica D915_09728 N
D918_02763 Trichuris suis D918_02763 N
DILT_0000246201 Diphyllobothrium latum DILT_0000246201 N
DILT_0000834901 Diphyllobothrium latum DILT_0000834901 I
DILT_0001226501 Diphyllobothrium latum DILT_0001226501 I
ENSECAG00000023678 Equus caballus ENSECAG00000023678 I
ENSEEUG00000003019 Erinaceus europaeus ENSEEUG00000003019 N
ENSGMOG00000004079 Gadus morhua ENSGMOG00000004079 N
ENSLOCG00000004278 Lepisosteus oculatus ENSLOCG00000004278 N
ENSOANG00000004408 Ornithorhynchus anatinus ENSOANG00000004408 N
ENSOPRG00000015148 Ochotona princeps ENSOPRG00000015148 N
e_gw.543.9.1 Branchiostoma floridae e_gw.543.9.1 N
e_gw.85.119.1 Branchiostoma floridae e_gw.85.119.1 N
F775_52178 Aegilops tauschii F775_52178 N
Gfo_R001742 Geospiza fortis Gfo_R001742 N
Gfo_R001743 Geospiza fortis Gfo_R001743 N
GPUH_0000280301 Gongylonema pulchrum GPUH_0000280301 N
Hba_18080 Heterorhabditis bacteriophora Hba_18080 N
HHEX Echinops telfairi ENSETEG00000009524 N
HmN_000453400 Hymenolepis microstoma HmN_000453400 I
HmN_000683200 Hymenolepis microstoma HmN_000683200 N
HNAJ_0000742201 Hymenolepis nana HNAJ_0000742201 N
Hsal_00498--XP_394578.2_APIME Harpegnathos saltator Hsal_00498--XP_394578.2_APIME N
ISCW011755 Ixodes scapularis ISCW011755 N
L892_g18619 Steinernema scapterisci L892_g18619 N
MCOS_0000074401 Mesocestoides corti MCOS_0000074401 N
MhA1_Contig1149.frz3.gene7 Meloidogyne hapla MhA1_Contig1149.frz3.gene7 N
MhA1_Contig864.frz3.gene5 Meloidogyne hapla MhA1_Contig864.frz3.gene5 N
NECAME_06897 Necator americanus NECAME_06897 N
nkx2-4 Xenopus tropicalis XB-GENE-487481 I
nRc.2.0.1.g41491 Romanomermis culicivorax nRc.2.0.1.g41491 N
Ogr00063 Ophisaurus gracilis Ogr00063 I
Ogr05812 Ophisaurus gracilis Ogr05812 N
Ppa-ceh-28 Pristionchus pacificus PPA19627 N
PXEA_0000454701 Protopolystoma xenopodis PXEA_0000454701 N
PXEA_0002847001 Protopolystoma xenopodis PXEA_0002847001 N
SBAD_0000184901 Soboliphyme baturini SBAD_0000184901 I
scaffold28-EXSNAP2012.55 Pristionchus exspectatus scaffold28-EXSNAP2012.55 N
scro Drosophila melanogaster FBgn0028993 D
SINV24463 Solenopsis invicta SINV24463 N
Sjc_0057900 Schistosoma japonicum Sjc_0057900 N
SNAPOd2T00004995001 Oikopleura dioica SNAPOd2T00004995001 N
SPER_0002786601 Spirometra erinaceieuropaei SPER_0002786601 N
SPER_0003017401 Spirometra erinaceieuropaei SPER_0003017401 N
SPU_019656 Strongylocentrotus purpuratus SPU_019656 N
SSLN_0001021301 Schistocephalus solidus SSLN_0001021301 I
SVUK_0001310301 Strongylus vulgaris SVUK_0001310301 N
Tal_R010536 Tyto alba Tal_R010536 N
Tal_R010537 Tyto alba Tal_R010537 N
YQE_02582 Dendroctonus ponderosae YQE_02582 N