Carubv10014232m.g (Capsella rubella)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Carubv10014232m.g T257772_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.875 0.875
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10014232m MADS box 10 58

Links

Other MADS box family TFs
Other Capsella rubella TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00049p00217400 Amborella trichopoda AMTR_s00049p00217400 I 0.000
BGIOSGA006133 Oryza indica BGIOSGA006133 N 0.000
BGIOSGA014881 Oryza indica BGIOSGA014881 N 0.000
BRADI3G47627 Brachypodium distachyon BRADI3G47627 I 0.000
BRADI5G13450 Brachypodium distachyon BRADI5G13450 N 0.000
F775_00415 Aegilops tauschii F775_00415 N 0.000
F775_14938 Aegilops tauschii F775_14938 N 0.000
F775_30638 Aegilops tauschii F775_30638 I 0.000
GRMZM2G038073 Zea mays GRMZM2G038073 N 0.000
GRMZM2G104078 Zea mays GRMZM2G104078 N 0.000
GSMUA_Achr9G01880_001 Musa acuminata GSMUA_Achr9G01880_001 I 0.000
LPERR02G18380 Leersia perrieri LPERR02G18380 N 0.000
mgf018486m Mimulus guttatus mgf018486m I 0.000
OB02G30060 Oryza brachyantha OB02G30060 N 0.000
OBART02G22660 Oryza barthii OBART02G22660 N 0.000
OBART04G16110 Oryza barthii OBART04G16110 N 0.000
OGLUM02G22980 Oryza glumaepatula OGLUM02G22980 N 0.000
OGLUM04G16020 Oryza glumaepatula OGLUM04G16020 N 0.000
OLONG_005904 Oryza longistaminata OLONG_005904 N 0.000
OLONG_021848 Oryza longistaminata OLONG_021848 N 0.000
OMERI01G02010 Oryza meridionalis OMERI01G02010 N 0.000
OMERI02G22200 Oryza meridionalis OMERI02G22200 N 0.000
ONIVA02G25300 Oryza nivara ONIVA02G25300 N 0.000
ONIVA04G14230 Oryza nivara ONIVA04G14230 N 0.000
OPUNC02G20570 Oryza punctata OPUNC02G20570 N 0.000
OPUNC04G13980 Oryza punctata OPUNC04G13980 N 0.000
ORGLA02G0193300 Oryza glaberrima ORGLA02G0193300 N 0.000
ORUFI02G23890 Oryza rufipogon ORUFI02G23890 N 0.000
ORUFI04G17470 Oryza rufipogon ORUFI04G17470 N 0.000
OS02G0594800 Oryza sativa OS02G0594800 N 0.000
Pavir.Ab02181 Panicum virgatum Pavir.Ab02181 I 0.000
Pavir.Ga01597 Panicum virgatum Pavir.Ga01597 I 0.000
Pavir.Gb01338 Panicum virgatum Pavir.Gb01338 I 0.000
PDK_20s1381351g001 Phoenix dactylifera PDK_20s1381351g001 I 0.000
PK17141.1 Cannabis sativa PK17141.1 I 0.000
POPTR_0007s01350 Populus trichocarpa POPTR_0007s01350 I 0.000
Sb04g024780 Sorghum bicolor Sb04g024780 N 0.000
Sb06g020103 Sorghum bicolor Sb06g020103 I 0.000
Si012740m.g Setaria italica Si012740m.g N 0.000
Si017393m.g Setaria italica Si017393m.g I 0.000
Traes_2DL_3757D78B3 Triticum aestivum Traes_2DL_3757D78B3 N 0.000
Traes_2DL_AE270CBAA1 Triticum aestivum Traes_2DL_AE270CBAA1 N 0.000
Traes_6AL_C14335DC8 Triticum aestivum Traes_6AL_C14335DC8 I 0.000
Traes_6BL_B27806C89 Triticum aestivum Traes_6BL_B27806C89 I 0.000
Traes_6DL_2F3586557 Triticum aestivum Traes_6DL_2F3586557 I 0.000