CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
evm.TU.supercontig_43.109
(
Carica papaya
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
evm.TU.supercontig_43.109
T258250_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_43.109
MADS box
12
62
RETKEQRAVTFSKRRRGLFNKAAELCVLCDFQVAVLVSSPNPAKLNKFYTF
Links
Other
MADS box
family TFs
Other
Carica papaya
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BGIOSGA023211
Oryza indica
BGIOSGA023211
N
BRADI1G36770
Brachypodium distachyon
BRADI1G36770
N
BRADI1G58817
Brachypodium distachyon
BRADI1G58817
N
GRMZM2G163641
Zea mays
GRMZM2G163641
N
LPERR06G16850
Leersia perrieri
LPERR06G16850
N
MLOC_45474
Hordeum vulgare
MLOC_45474
N
OB06G27850
Oryza brachyantha
OB06G27850
N
OBART06G20210
Oryza barthii
OBART06G20210
N
OGLUM06G21270
Oryza glumaepatula
OGLUM06G21270
N
OLONG_013537
Oryza longistaminata
OLONG_013537
N
ONIVA06G23990
Oryza nivara
ONIVA06G23990
N
OPUNC06G18430
Oryza punctata
OPUNC06G18430
N
ORUFI06G21620
Oryza rufipogon
ORUFI06G21620
N
OS06G0601000
Oryza sativa
OS06G0601000
N
Pavir.Da00552
Panicum virgatum
Pavir.Da00552
N
Pavir.Db01233
Panicum virgatum
Pavir.Db01233
N
Sb10g023400
Sorghum bicolor
Sb10g023400
N
Traes_7AL_0FFE02C4C
Triticum aestivum
Traes_7AL_0FFE02C4C
N
Traes_7BL_E2E7AA383
Triticum aestivum
Traes_7BL_E2E7AA383
N
Traes_7DL_613F5240E
Triticum aestivum
Traes_7DL_613F5240E
N