CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_43.109
(
Carica papaya
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
evm.TU.supercontig_43.109
T258250_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_43.109
MADS box
12
62
RETKEQRAVTFSKRRRGLFNKAAELCVLCDFQVAVLVSSPNPAKLNKFYTF
Links
Other
MADS box
family TFs
Other
Carica papaya
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AMTR_s00018p00071850
Amborella trichopoda
AMTR_s00018p00071850
I
AMTR_s00018p00074980
Amborella trichopoda
AMTR_s00018p00074980
I
AMTR_s00022p00160350
Amborella trichopoda
AMTR_s00022p00160350
I
anac069
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_6002854
I
Aquca_009_00966
Aquilegia coerulea
Aquca_009_00966
I
BGIOSGA001578
Oryza indica
BGIOSGA001578
I
BGIOSGA002597
Oryza indica
BGIOSGA002597
I
BGIOSGA014034
Oryza indica
BGIOSGA014034
I
BGIOSGA022116
Oryza indica
BGIOSGA022116
N
BGIOSGA026695
Oryza indica
BGIOSGA026695
I
BGIOSGA027623
Oryza indica
BGIOSGA027623
I
BGIOSGA031230
Oryza indica
BGIOSGA031230
I
Bo5g002810
Brassica oleracea
Bo5g002810
I
Bo5g002850
Brassica oleracea
Bo5g002850
I
Bo9g004070
Brassica oleracea
Bo9g004070
I
Bostr.0556s0555
Boechera stricta
Bostr.0556s0555
I
Bostr.25375s0002
Boechera stricta
Bostr.25375s0002
I
Bostr.4825s0023
Boechera stricta
Bostr.4825s0023
I
Bostr.5325s0009
Boechera stricta
Bostr.5325s0009
I
Bostr.5325s0011
Boechera stricta
Bostr.5325s0011
I
Bostr.5325s0019
Boechera stricta
Bostr.5325s0019
I
Bra036328
Brassica rapa
Bra036328
I
BRADI1G52480
Brachypodium distachyon
BRADI1G52480
N
BRADI3G16480
Brachypodium distachyon
BRADI3G16480
I
BRADI4G37327
Brachypodium distachyon
BRADI4G37327
I
Cagra.1968s0045
Capsella grandiflora
Cagra.1968s0045
I
Cagra.27691s0001
Capsella grandiflora
Cagra.27691s0001
I
Carubv10000489m.g
Capsella rubella
Carubv10000489m.g
I
Carubv10003260m.g
Capsella rubella
Carubv10003260m.g
I
Carubv10009049m.g
Capsella rubella
Carubv10009049m.g
I
Carubv10009451m.g
Capsella rubella
Carubv10009451m.g
I
Ca_04069
Cicer arietinum
Ca_04069
I
Ca_20988
Cicer arietinum
Ca_20988
I
Ca_27204
Cicer arietinum
Ca_27204
I
chr1.LjT41E18.160.nc
Lotus japonicus
chr1.LjT41E18.160.nc
I
Cla011742
Citrullus lanatus
Cla011742
I
Eucgr.I02571
Eucalyptus grandis
Eucgr.I02571
N
Eucgr.J00531
Eucalyptus grandis
Eucgr.J00531
I
Eucgr.K02303
Eucalyptus grandis
Eucgr.K02303
I
evm.TU.contig_29561
Carica papaya
evm.TU.contig_29561
I
evm.TU.supercontig_3.170
Carica papaya
evm.TU.supercontig_3.170
N
e_gw1.117.35.1
Physcomitrella patens
e_gw1.117.35.1
I
e_gw1.164.26.1
Physcomitrella patens
e_gw1.164.26.1
I
e_gw1.259.4.1
Physcomitrella patens
e_gw1.259.4.1
I
F775_13961
Aegilops tauschii
F775_13961
I
F775_20638
Aegilops tauschii
F775_20638
I
F775_30082
Aegilops tauschii
F775_30082
I
fgenesh1_pg.C_scaffold_3000386
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_3000386
I
fgenesh1_pg.scaffold_182000024
Physcomitrella patens
fgenesh1_pg.scaffold_182000024
I
gene08448-v1.0-hybrid
Fragaria vesca
gene08448-v1.0-hybrid
I
gene23394-v1.0-hybrid
Fragaria vesca
gene23394-v1.0-hybrid
N
GLYMA12G31211
Glycine max
GLYMA12G31211
I
GLYMA14G36840
Glycine max
GLYMA14G36840
I
Gorai.004G125900
Gossypium raimondii
Gorai.004G125900
I
Gorai.006G113700
Gossypium raimondii
Gorai.006G113700
N
Gorai.006G203800
Gossypium raimondii
Gorai.006G203800
I
Gorai.007G017500
Gossypium raimondii
Gorai.007G017500
I
Gorai.009G083500
Gossypium raimondii
Gorai.009G083500
N
GRMZM2G003715
Zea mays
GRMZM2G003715
I
GRMZM2G052239
Zea mays
GRMZM2G052239
I
GRMZM2G139700
Zea mays
GRMZM2G139700
I
GRMZM2G163914
Zea mays
GRMZM2G163914
N
GRMZM2G459156
Zea mays
GRMZM2G459156
N
GSMUA_Achr10G08120_001
Musa acuminata
GSMUA_Achr10G08120_001
I
GSMUA_Achr11G07800_001
Musa acuminata
GSMUA_Achr11G07800_001
N
GSMUA_Achr11G16860_001
Musa acuminata
GSMUA_Achr11G16860_001
I
GSMUA_Achr1G03560_001
Musa acuminata
GSMUA_Achr1G03560_001
I
GSMUA_Achr2G11810_001
Musa acuminata
GSMUA_Achr2G11810_001
I
GSMUA_Achr3G00330_001
Musa acuminata
GSMUA_Achr3G00330_001
I
GSMUA_Achr4G02390_001
Musa acuminata
GSMUA_Achr4G02390_001
I
GSMUA_Achr4G29170_001
Musa acuminata
GSMUA_Achr4G29170_001
I
GSMUA_Achr4G32010_001
Musa acuminata
GSMUA_Achr4G32010_001
I
GSMUA_Achr6G31580_001
Musa acuminata
GSMUA_Achr6G31580_001
I
GSMUA_Achr7G21780_001
Musa acuminata
GSMUA_Achr7G21780_001
I
GSMUA_Achr9G10040_001
Musa acuminata
GSMUA_Achr9G10040_001
I
GSMUA_AchrUn_randomG04060_001
Musa acuminata
GSMUA_AchrUn_randomG04060_001
I
gw1.1.690.1
Physcomitrella patens
gw1.1.690.1
I
gw1.6.394.1
Physcomitrella patens
gw1.6.394.1
I
LPERR06G00060
Leersia perrieri
LPERR06G00060
N
LPERR08G03510
Leersia perrieri
LPERR08G03510
I
LPERR08G17020
Leersia perrieri
LPERR08G17020
I
LPERR09G14720
Leersia perrieri
LPERR09G14720
I
LPERR11G01300
Leersia perrieri
LPERR11G01300
I
LPERR12G01440
Leersia perrieri
LPERR12G01440
I
Lus10015587.g
Linum usitatissimum
Lus10015587.g
I
Lus10032919.g
Linum usitatissimum
Lus10032919.g
I
MDP0000133636
Malus domestica
MDP0000133636
N
MDP0000214515
Malus domestica
MDP0000214515
I
MDP0000282616
Malus domestica
MDP0000282616
I
MDP0000575835
Malus domestica
MDP0000575835
I
MDP0000907489
Malus domestica
MDP0000907489
N
mgf015836m
Mimulus guttatus
mgf015836m
I
mgf022344m
Mimulus guttatus
mgf022344m
I
MLOC_13932
Hordeum vulgare
MLOC_13932
I
MLOC_37843
Hordeum vulgare
MLOC_37843
I
MLOC_50406
Hordeum vulgare
MLOC_50406
I
MLOC_65286
Hordeum vulgare
MLOC_65286
I
MLOC_75297
Hordeum vulgare
MLOC_75297
N
MTR_3g093050
Medicago truncatula
MTR_3g093050
I
MTR_5g069030
Medicago truncatula
MTR_5g069030
I
MTR_8g023840
Medicago truncatula
MTR_8g023840
I
MTR_8g023860
Medicago truncatula
MTR_8g023860
I
MTR_8g023930
Medicago truncatula
MTR_8g023930
I
NAC026
Arabidopsis thaliana
AT1G62700
I
NAC69
Arabidopsis thaliana
AT4G01550
D
OB01G10300
Oryza brachyantha
OB01G10300
I
OB08G13730
Oryza brachyantha
OB08G13730
I
OB09G25590
Oryza brachyantha
OB09G25590
I
OBART01G00360
Oryza barthii
OBART01G00360
I
OBART01G16620
Oryza barthii
OBART01G16620
I
OBART06G00060
Oryza barthii
OBART06G00060
N
OBART08G03460
Oryza barthii
OBART08G03460
I
OGLUM01G00350
Oryza glumaepatula
OGLUM01G00350
I
OGLUM01G19440
Oryza glumaepatula
OGLUM01G19440
I
OGLUM04G30580
Oryza glumaepatula
OGLUM04G30580
I
OGLUM06G00040
Oryza glumaepatula
OGLUM06G00040
N
OGLUM08G03540
Oryza glumaepatula
OGLUM08G03540
I
OGLUM08G21360
Oryza glumaepatula
OGLUM08G21360
I
OGLUM09G19480
Oryza glumaepatula
OGLUM09G19480
I
OLONG_000105
Oryza longistaminata
OLONG_000105
I
OLONG_004904
Oryza longistaminata
OLONG_004904
N
OLONG_022415
Oryza longistaminata
OLONG_022415
I
OMERI01G15210
Oryza meridionalis
OMERI01G15210
I
OMERI01G15230
Oryza meridionalis
OMERI01G15230
I
OMERI04G25730
Oryza meridionalis
OMERI04G25730
I
OMERI06G00050
Oryza meridionalis
OMERI06G00050
N
OMERI08G03500
Oryza meridionalis
OMERI08G03500
I
OMERI09G14170
Oryza meridionalis
OMERI09G14170
I
ONIVA01G00280
Oryza nivara
ONIVA01G00280
I
ONIVA01G18370
Oryza nivara
ONIVA01G18370
I
ONIVA04G29890
Oryza nivara
ONIVA04G29890
I
ONIVA06G00080
Oryza nivara
ONIVA06G00080
N
ONIVA08G03440
Oryza nivara
ONIVA08G03440
I
ONIVA08G22710
Oryza nivara
ONIVA08G22710
I
ONIVA09G20130
Oryza nivara
ONIVA09G20130
I
OPUNC01G00320
Oryza punctata
OPUNC01G00320
I
OPUNC04G28220
Oryza punctata
OPUNC04G28220
I
OPUNC06G00030
Oryza punctata
OPUNC06G00030
N
OPUNC08G03310
Oryza punctata
OPUNC08G03310
I
OPUNC08G18240
Oryza punctata
OPUNC08G18240
I
ORGLA04G0270600
Oryza glaberrima
ORGLA04G0270600
I
ORGLA06G0000500
Oryza glaberrima
ORGLA06G0000500
N
ORGLA08G0029000
Oryza glaberrima
ORGLA08G0029000
I
ORGLA08G0177600
Oryza glaberrima
ORGLA08G0177600
I
ORGLA09G0151800
Oryza glaberrima
ORGLA09G0151800
I
ORGLA12G0187900
Oryza glaberrima
ORGLA12G0187900
I
ORUFI01G00320
Oryza rufipogon
ORUFI01G00320
I
ORUFI01G18470
Oryza rufipogon
ORUFI01G18470
I
ORUFI04G32410
Oryza rufipogon
ORUFI04G32410
I
ORUFI06G00070
Oryza rufipogon
ORUFI06G00070
N
ORUFI08G03870
Oryza rufipogon
ORUFI08G03870
I
ORUFI08G22550
Oryza rufipogon
ORUFI08G22550
I
OS01G0104500
Oryza sativa
OS01G0104500
I
OS01G0393100
Oryza sativa
OS01G0393100
I
OS04G0691300
Oryza sativa
OS04G0691300
I
OS06G0101800
Oryza sativa
OS06G0101800
N
OS08G0157900
Oryza sativa
OS08G0157900
I
OS08G0511200
Oryza sativa
OS08G0511200
I
Pavir.Ba01386
Panicum virgatum
Pavir.Ba01386
I
Pavir.Bb02626
Panicum virgatum
Pavir.Bb02626
I
Pavir.Fa01901
Panicum virgatum
Pavir.Fa01901
I
Pavir.Fb00405
Panicum virgatum
Pavir.Fb00405
I
Pavir.Ia03443
Panicum virgatum
Pavir.Ia03443
I
PGSC0003DMG400000555
Solanum tuberosum
PGSC0003DMG400000555
I
PGSC0003DMG400005892
Solanum tuberosum
PGSC0003DMG400005892
I
PGSC0003DMG400019615
Solanum tuberosum
PGSC0003DMG400019615
I
PGSC0003DMG400039898
Solanum tuberosum
PGSC0003DMG400039898
I
Pm018442
Prunus mume
Pm018442
N
Pm019659
Prunus mume
Pm019659
I
Pm028711
Prunus mume
Pm028711
I
Pm028712
Prunus mume
Pm028712
N
POPTR_0002s15560
Populus trichocarpa
POPTR_0002s15560
I
POPTR_0002s18290
Populus trichocarpa
POPTR_0002s18290
I
POPTR_0002s18310
Populus trichocarpa
POPTR_0002s18310
I
POPTR_0009s02430
Populus trichocarpa
POPTR_0009s02430
N
POPTR_0014s07210
Populus trichocarpa
POPTR_0014s07210
I
POPTR_0014s10330
Populus trichocarpa
POPTR_0014s10330
I
POPTR_0014s10350
Populus trichocarpa
POPTR_0014s10350
I
POPTR_0014s10360
Populus trichocarpa
POPTR_0014s10360
I
PRUPE_ppa008321mg
Prunus persica
PRUPE_ppa008321mg
N
PRUPE_ppa016876mg
Prunus persica
PRUPE_ppa016876mg
N
PRUPE_ppa017765mg
Prunus persica
PRUPE_ppa017765mg
I
PRUPE_ppa019780mg
Prunus persica
PRUPE_ppa019780mg
N
PRUPE_ppa022384mg
Prunus persica
PRUPE_ppa022384mg
I
PRUPE_ppa023197mg
Prunus persica
PRUPE_ppa023197mg
N
PRUPE_ppb017658mg
Prunus persica
PRUPE_ppb017658mg
I
SapurV1A.0024s0340
Salix purpurea
SapurV1A.0024s0340
I
SapurV1A.0093s0260
Salix purpurea
SapurV1A.0093s0260
I
SapurV1A.0162s0450
Salix purpurea
SapurV1A.0162s0450
I
SapurV1A.0321s0340
Salix purpurea
SapurV1A.0321s0340
I
SapurV1A.0321s0350
Salix purpurea
SapurV1A.0321s0350
I
SapurV1A.0321s0360
Salix purpurea
SapurV1A.0321s0360
I
SapurV1A.0561s0300
Salix purpurea
SapurV1A.0561s0300
N
SapurV1A.0586s0170
Salix purpurea
SapurV1A.0586s0170
I
Sb02g032230
Sorghum bicolor
Sb02g032230
I
Sb07g003900
Sorghum bicolor
Sb07g003900
I
Sb10g000101
Sorghum bicolor
Sb10g000101
N
Si006105m.g
Setaria italica
Si006105m.g
N
Si022723m.g
Setaria italica
Si022723m.g
I
Si032702m.g
Setaria italica
Si032702m.g
I
Solyc03g080090.2
Solanum lycopersicum
Solyc03g080090.2
I
Solyc06g074170.2
Solanum lycopersicum
Solyc06g074170.2
I
Solyc11g068750.1
Solanum lycopersicum
Solyc11g068750.1
I
TCM_015535
Theobroma cacao
TCM_015535
I
TCM_041332
Theobroma cacao
TCM_041332
N
Thhalv10012158m.g
Eutrema salsugineum
Thhalv10012158m.g
I
Thhalv10023502m.g
Eutrema salsugineum
Thhalv10023502m.g
I
Thhalv10028684m.g
Eutrema salsugineum
Thhalv10028684m.g
I
Traes_4AL_22CE41C6F
Triticum aestivum
Traes_4AL_22CE41C6F
N
Traes_5BL_8BE382FE3
Triticum aestivum
Traes_5BL_8BE382FE3
I
Traes_5DL_B69423A67
Triticum aestivum
Traes_5DL_B69423A67
I
Traes_7AL_669D4AE47
Triticum aestivum
Traes_7AL_669D4AE47
I
Traes_7AL_74CC91D39
Triticum aestivum
Traes_7AL_74CC91D39
I
Traes_7AS_A6C843545
Triticum aestivum
Traes_7AS_A6C843545
N
Traes_7BL_0C386426A
Triticum aestivum
Traes_7BL_0C386426A
I
Traes_7DL_AB67A0B36
Triticum aestivum
Traes_7DL_AB67A0B36
I
TRIUR3_13805
Triticum urartu
TRIUR3_13805
I
TRIUR3_32613
Triticum urartu
TRIUR3_32613
I
VIT_15s0048g02300
Vitis vinifera
VIT_15s0048g02300
N
VIT_15s0048g02320
Vitis vinifera
VIT_15s0048g02320
I
VIT_19s0027g00910
Vitis vinifera
VIT_19s0027g00910
I