Pavir.J19662 (Panicum virgatum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Pavir.J19662 T258955_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.723 0.723
SOC1
M08425_2.00 		Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG		 ChIP-chip
Mathelier et al.(2014)
MA0554.1 		0.702 0.702
SOC1
M10915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL20_01 		0.702 0.702
Q9ATE8_PETHY
M11011_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP21_01 		0.702 0.702
Q40591_TOBAC
M11002_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_03 		0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J19662.1.p MADS box 64 110

Links

Other MADS box family TFs
Other Panicum virgatum TFs

165 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AALB008401 Anopheles albimanus AALB008401 N 0.000
AATE016330 Anopheles atroparvus AATE016330 N 0.000
ACAC_0000775701 Angiostrongylus cantonensis ACAC_0000775701 N 0.000
ACEP15037 Atta cephalotes ACEP15037 N 0.000
ACEP16989 Atta cephalotes ACEP16989 N 0.000
ACHR003840 Anopheles christyi ACHR003840 N 0.000
ACOM033136 Anopheles coluzzii ACOM033136 N 0.000
ACUA001666 Anopheles culicifacies ACUA001666 N 0.000
ADIR005529 Anopheles dirus ADIR005529 N 0.000
AEPI000237 Anopheles epiroticus AEPI000237 N 0.000
AFAF020113 Anopheles farauti AFAF020113 N 0.000
Alligator_sinensis_CCG019841.1 Alligator sinensis Alligator_sinensis_CCG019841.1 N 0.000
AMEC011489 Anopheles melas AMEC011489 N 0.000
AMEC021350 Anopheles melas AMEC021350 N 0.000
AMEM003504 Anopheles merus AMEM003504 N 0.000
AMIN004125 Anopheles minimus AMIN004125 N 0.000
ANCCAN_09768 Ancylostoma caninum ANCCAN_09768 N 0.000
AQUA008818 Anopheles quadriannulatus AQUA008818 N 0.000
BGIBMGA000450 Bombyx mori BGIBMGA000450 N 0.000
BGLB006178 Biomphalaria glabrata BGLB006178 N 0.000
BGLB009417 Biomphalaria glabrata BGLB009417 N 0.000
BGLB013890 Biomphalaria glabrata BGLB013890 N 0.000
BTMF_0001476301 Brugia timori BTMF_0001476301 N 0.000
Cflo_06216--XP_001121055.1_APIME Camponotus floridanus Cflo_06216--XP_001121055.1_APIME N 0.000
Cmyd_10017525 Chelonia mydas Cmyd_10017525 N 0.000
CPIJ008461 Culex quinquefasciatus CPIJ008461 N 0.000
CpipJ_CPIJ008461 Culex pipiens CpipJ_CPIJ008461 N 0.000
D915_01997 Fasciola hepatica D915_01997 N 0.000
E5Q_06531 Mixia osmundae E5Q_06531 N 0.000
ECANG7_03670 Echinococcus canadensis ECANG7_03670 N 0.000
EEL_0001066701 Elaeophora elaphi EEL_0001066701 N 0.000
ENSAMXG00000012389 Astyanax mexicanus ENSAMXG00000012389 N 0.000
ENSAPLG00000015903 Anas platyrhynchos ENSAPLG00000015903 N 0.000
ENSCJAG00000020654 Callithrix jacchus ENSCJAG00000020654 N 0.000
ENSGMOG00000007710 Gadus morhua ENSGMOG00000007710 N 0.000
ENSLACG00000006161 Latimeria chalumnae ENSLACG00000006161 N 0.000
ENSLOCG00000005910 Lepisosteus oculatus ENSLOCG00000005910 N 0.000
ENSMEUG00000004221 Macropus eugenii ENSMEUG00000004221 N 0.000
ENSMEUG00000011038 Macropus eugenii ENSMEUG00000011038 N 0.000
ENSMEUG00000011815 Macropus eugenii ENSMEUG00000011815 N 0.000
ENSMICG00000006751 Microcebus murinus ENSMICG00000006751 N 0.000
ENSTNIG00000002085 Tetraodon nigroviridis ENSTNIG00000002085 N 0.000
ENSTRUG00000001265 Takifugu rubripes ENSTRUG00000001265 N 0.000
ENSTSYG00000003698 Tarsius syrichta ENSTSYG00000003698 N 0.000
GATA2 Cavia porcellus ENSCPOG00000009802 N 0.000
GATA3 Procavia capensis ENSPCAG00000005175 N 0.000
GATA5 Pteropus vampyrus ENSPVAG00000011581 N 0.000
GATA5 Tursiops truncatus ENSTTRG00000011109 N 0.000
GATA5 Echinops telfairi ENSETEG00000019185 N 0.000
GB41785 Apis mellifera GB41785 N 0.000
GPUH_0001622501 Gongylonema pulchrum GPUH_0001622501 N 0.000
Hba_17474 Heterorhabditis bacteriophora Hba_17474 N 0.000
HelroG92960 Helobdella robusta HelroG92960 N 0.000
Hsal_08742--XP_001121055.1_APIME Harpegnathos saltator Hsal_08742--XP_001121055.1_APIME N 0.000
ISCW005453 Ixodes scapularis ISCW005453 N 0.000
KGM_21940 Danaus plexippus KGM_21940 N 0.000
L892_g4790 Steinernema scapterisci L892_g4790 N 0.000
L898_g20040 Steinernema monticolum L898_g20040 N 0.000
LCUP000677 Lucilia cuprina LCUP000677 N 0.000
LDEC000517 Leptinotarsa decemlineata LDEC000517 N 0.000
LDEC012262 Leptinotarsa decemlineata LDEC012262 N 0.000
LLOJ006332 Lutzomyia longipalpis LLOJ006332 N 0.000
MESCA005245 Megaselia scalaris MESCA005245 N 0.000
MESCA009585 Megaselia scalaris MESCA009585 N 0.000
nAv.1.0.1.g02461 Acanthocheilonema viteae nAv.1.0.1.g02461 N 0.000
NBR_0000440401 Nippostrongylus brasiliensis NBR_0000440401 N 0.000
nLs.2.1.2.g08039 Litomosoides sigmodontis nLs.2.1.2.g08039 N 0.000
nOo.2.0.1.g05402 Onchocerca ochengi nOo.2.0.1.g05402 N 0.000
NV16862 Nasonia vitripennis NV16862 N 0.000
OFLC_0001290601 Onchocerca flexuosa OFLC_0001290601 N 0.000
Ogr01516 Ophisaurus gracilis Ogr01516 N 0.000
Ogr02074 Ophisaurus gracilis Ogr02074 N 0.000
Ogr18767 Ophisaurus gracilis Ogr18767 N 0.000
Pvit_13887 Pogona vitticeps Pvit_13887 N 0.000
PXEA_0000210501 Protopolystoma xenopodis PXEA_0000210501 N 0.000
SCUD_0000076401 Schistosoma curassoni SCUD_0000076401 N 0.000
SMAR009870 Strigamia maritima SMAR009870 N 0.000
SMTD_0001448601 Schistosoma mattheei SMTD_0001448601 N 0.000
SNAPOd2T00000006001 Oikopleura dioica SNAPOd2T00000006001 N 0.000
SNAPOd2T00000013001 Oikopleura dioica SNAPOd2T00000013001 N 0.000
SROB_0001536801 Schistosoma rodhaini SROB_0001536801 N 0.000
SSLN_0002001801 Schistocephalus solidus SSLN_0002001801 N 0.000
SVUK_0000185901 Strongylus vulgaris SVUK_0000185901 N 0.000
TASK_0000051701 Taenia asiatica TASK_0000051701 N 0.000
TCLT_0000454301 Thelazia callipaeda TCLT_0000454301 N 0.000
TCNE_0000673201 Toxocara canis TCNE_0000673201 N 0.000
TTAC_0001016601 Hydatigera taeniaeformis TTAC_0001016601 N 0.000
WBGene00241813 Onchocerca volvulus WBGene00241813 N 0.000
WUBG_05471 Wuchereria bancrofti WUBG_05471 N 0.000