Pavir.J19662 (Panicum virgatum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Pavir.J19662 T258955_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.723 0.723
SOC1
M08425_2.00 		Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG		 ChIP-chip
Mathelier et al.(2014)
MA0554.1 		0.702 0.702
SOC1
M10915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL20_01 		0.702 0.702
Q9ATE8_PETHY
M11011_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP21_01 		0.702 0.702
Q40591_TOBAC
M11002_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_03 		0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J19662.1.p MADS box 64 110

Links

Other MADS box family TFs
Other Panicum virgatum TFs

165 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Sb03g006210 Sorghum bicolor Sb03g006210 I 0.812
TRIUR3_30872 Triticum urartu TRIUR3_30872 I 0.812
Pavir.Bb00005 Panicum virgatum Pavir.Bb00005 I 0.812
BGIOSGA005076 Oryza indica BGIOSGA005076 I 0.809
GRMZM2G320549 Zea mays GRMZM2G320549 I 0.809
LPERR01G36730 Leersia perrieri LPERR01G36730 I 0.809
OBART01G42170 Oryza barthii OBART01G42170 I 0.809
OGLUM01G46440 Oryza glumaepatula OGLUM01G46440 I 0.809
OMERI01G39210 Oryza meridionalis OMERI01G39210 I 0.809
ONIVA01G48250 Oryza nivara ONIVA01G48250 I 0.809
OPUNC01G41110 Oryza punctata OPUNC01G41110 I 0.809
ORGLA01G0361900 Oryza glaberrima ORGLA01G0361900 I 0.809
BRADI2G59120 Brachypodium distachyon BRADI2G59120 I 0.792
Si004582m.g Setaria italica Si004582m.g I 0.792
Pavir.J02739 Panicum virgatum Pavir.J02739 I 0.792
TRIUR3_21732 Triticum urartu TRIUR3_21732 I 0.791
F775_43625 Aegilops tauschii F775_43625 I 0.787
GRMZM2G171650 Zea mays GRMZM2G171650 I 0.787
MLOC_12290 Hordeum vulgare MLOC_12290 I 0.787
Sb03g044170 Sorghum bicolor Sb03g044170 I 0.787
TRIUR3_19056 Triticum urartu TRIUR3_19056 I 0.787
TRIUR3_28473 Triticum urartu TRIUR3_28473 I 0.787
Si005133m.g Setaria italica Si005133m.g I 0.771
TRAES3BF009000010CFD_g Triticum aestivum TRAES3BF009000010CFD_g I 0.771
BRADI2G59187 Brachypodium distachyon BRADI2G59187 I 0.766
Traes_4BL_B8FFB0854 Triticum aestivum Traes_4BL_B8FFB0854 I 0.766
TRIUR3_30073 Triticum urartu TRIUR3_30073 I 0.766
Pavir.J08622 Panicum virgatum Pavir.J08622 I 0.766
ORUFI01G45590 Oryza rufipogon ORUFI01G45590 I 0.750
MADS51 Oryza sativa OS01G0922800 I 0.750
F775_00385 Aegilops tauschii F775_00385 I 0.745
F775_23758 Aegilops tauschii F775_23758 I 0.745
GSMUA_AchrUn_randomG20290_001 Musa acuminata GSMUA_AchrUn_randomG20290_001 I 0.745
TRAES3BF009000040CFD_g Triticum aestivum TRAES3BF009000040CFD_g I 0.745
Traes_7DS_4DF7EB08F Triticum aestivum Traes_7DS_4DF7EB08F I 0.745
VIT_15s0048g01240 Vitis vinifera VIT_15s0048g01240 I 0.745
Traes_7AS_F568FCBF1 Triticum aestivum Traes_7AS_F568FCBF1 I 0.739
AGL14 Arabidopsis thaliana AT4G11880 I 0.723
BGIOSGA029053 Oryza indica BGIOSGA029053 I 0.723
Bo9g093920 Brassica oleracea Bo9g093920 I 0.723
Bra029424 Brassica rapa Bra029424 I 0.723
AGL14 Arabidopsis lyrata fgenesh2_kg.6__3138__AT4G11880.1 I 0.723
GLYMA07G08831 Glycine max GLYMA07G08831 I 0.723
GLYMA09G40230 Glycine max GLYMA09G40230 I 0.723
GLYMA18G45780 Glycine max GLYMA18G45780 I 0.723
LPERR03G01640 Leersia perrieri LPERR03G01640 I 0.723
LPERR08G18330 Leersia perrieri LPERR08G18330 I 0.723
MLOC_76418 Hordeum vulgare MLOC_76418 I 0.723
MTR_7g075870 Medicago truncatula MTR_7g075870 I 0.723
OB03G11760 Oryza brachyantha OB03G11760 I 0.723
OBART03G01800 Oryza barthii OBART03G01800 I 0.723
OBART08G21560 Oryza barthii OBART08G21560 I 0.723
OGLUM03G01750 Oryza glumaepatula OGLUM03G01750 I 0.723
OGLUM08G22840 Oryza glumaepatula OGLUM08G22840 I 0.723
OLONG_010918 Oryza longistaminata OLONG_010918 I 0.723
OMERI03G01730 Oryza meridionalis OMERI03G01730 I 0.723
OMERI06G13650 Oryza meridionalis OMERI06G13650 I 0.723
ONIVA03G01420 Oryza nivara ONIVA03G01420 I 0.723
ONIVA08G24570 Oryza nivara ONIVA08G24570 I 0.723
OPUNC03G01630 Oryza punctata OPUNC03G01630 I 0.723
OPUNC08G18260 Oryza punctata OPUNC08G18260 I 0.723
ORGLA03G0015400 Oryza glaberrima ORGLA03G0015400 I 0.723
ORGLA08G0229900 Oryza glaberrima ORGLA08G0229900 I 0.723
ORUFI03G01510 Oryza rufipogon ORUFI03G01510 I 0.723
ORUFI08G24040 Oryza rufipogon ORUFI08G24040 I 0.723
MADS50 Oryza sativa OS03G0122600 D 0.723
OS08G0531900 Oryza sativa OS08G0531900 I 0.723
PRUPE_ppa014428mg Prunus persica PRUPE_ppa014428mg I 0.723
TCM_005456 Theobroma cacao TCM_005456 I 0.723
TCM_016147 Theobroma cacao TCM_016147 I 0.723
Cla011687 Citrullus lanatus Cla011687 I 0.723
Pm018089 Prunus mume Pm018089 I 0.723
cassava30125.valid.m1 Manihot esculenta cassava30125.valid.m1 I 0.723
cassava723.valid.m1 Manihot esculenta cassava723.valid.m1 I 0.723
Cucsa.302640 Cucumis sativus Cucsa.302640 I 0.723
mgf007062m Mimulus guttatus mgf007062m I 0.723
Bostr.25463s0138 Boechera stricta Bostr.25463s0138 I 0.723
Cagra.7242s0001 Capsella grandiflora Cagra.7242s0001 I 0.723
Carubv10001906m.g Capsella rubella Carubv10001906m.g I 0.723
Ciclev10023160m.g Citrus clementina Ciclev10023160m.g I 0.723
Eucgr.C01942 Eucalyptus grandis Eucgr.C01942 I 0.723
Eucgr.D01939 Eucalyptus grandis Eucgr.D01939 I 0.723
Eucgr.D02425 Eucalyptus grandis Eucgr.D02425 I 0.723
Lus10006715.g Linum usitatissimum Lus10006715.g I 0.723
Lus10006716.g Linum usitatissimum Lus10006716.g I 0.723
Lus10014143.g Linum usitatissimum Lus10014143.g I 0.723
Lus10014144.g Linum usitatissimum Lus10014144.g I 0.723
Lus10036543.g Linum usitatissimum Lus10036543.g I 0.723
orange1.1g028363m.g Citrus sinensis orange1.1g028363m.g I 0.723
Thhalv10028949m.g Eutrema salsugineum Thhalv10028949m.g I 0.723
PK10594.1 Cannabis sativa PK10594.1 I 0.723
PK19764.1 Cannabis sativa PK19764.1 I 0.723
GRMZM2G026223 Zea mays GRMZM2G026223 I 0.708
GRMZM2G171365 Zea mays GRMZM2G171365 I 0.708
GSMUA_Achr11G15560_001 Musa acuminata GSMUA_Achr11G15560_001 I 0.708
GSMUA_Achr8G09250_001 Musa acuminata GSMUA_Achr8G09250_001 I 0.708
Si038257m.g Setaria italica Si038257m.g I 0.708
TRIUR3_20985 Triticum urartu TRIUR3_20985 I 0.708
Cla007057 Citrullus lanatus Cla007057 I 0.708
Cucsa.362960 Cucumis sativus Cucsa.362960 I 0.708
gene19425-v1.0-hybrid Fragaria vesca gene19425-v1.0-hybrid I 0.708
Gorai.008G242700 Gossypium raimondii Gorai.008G242700 I 0.708
PK12001.1 Cannabis sativa PK12001.1 I 0.708
SOC1 Arabidopsis thaliana AT2G45660 D 0.702
AGL19 Arabidopsis thaliana AT4G22950 I 0.702
MADS56 Oryza indica BGIOSGA033356 I 0.702
Bo1g031900 Brassica oleracea Bo1g031900 I 0.702
Bo3g038880 Brassica oleracea Bo3g038880 I 0.702
Bo3g165710 Brassica oleracea Bo3g165710 I 0.702
Bo4g195720 Brassica oleracea Bo4g195720 I 0.702
Bra000393 Brassica rapa Bra000393 I 0.702
Bra013662 Brassica rapa Bra013662 I 0.702
Bra020826 Brassica rapa Bra020826 I 0.702
Bra039324 Brassica rapa Bra039324 I 0.702
BRADI3G41297 Brachypodium distachyon BRADI3G41297 I 0.702
BRADI4G30090 Brachypodium distachyon BRADI4G30090 I 0.702
F775_08627 Aegilops tauschii F775_08627 I 0.702
AGL19 Arabidopsis lyrata fgenesh2_kg.7__2003__AT4G22950.1 I 0.702
GLYMA03G02191 Glycine max GLYMA03G02191 I 0.702
GRMZM2G098986 Zea mays GRMZM2G098986 I 0.702
GSMUA_Achr3G30440_001 Musa acuminata GSMUA_Achr3G30440_001 I 0.702
LPERR10G12950 Leersia perrieri LPERR10G12950 I 0.702
OB08G28340 Oryza brachyantha OB08G28340 I 0.702
OB10G24040 Oryza brachyantha OB10G24040 I 0.702
OBART10G16960 Oryza barthii OBART10G16960 I 0.702
OGLUM10G16960 Oryza glumaepatula OGLUM10G16960 I 0.702
OLONG_017665 Oryza longistaminata OLONG_017665 I 0.702
OMERI10G13430 Oryza meridionalis OMERI10G13430 I 0.702
ONIVA10G18680 Oryza nivara ONIVA10G18680 I 0.702
OPUNC08G19670 Oryza punctata OPUNC08G19670 I 0.702
OPUNC10G15300 Oryza punctata OPUNC10G15300 I 0.702
ORGLA10G0119200 Oryza glaberrima ORGLA10G0119200 I 0.702
ORUFI10G17990 Oryza rufipogon ORUFI10G17990 I 0.702
MADS56 Oryza sativa OS10G0536100 I 0.702
PGSC0003DMG400000008 Solanum tuberosum PGSC0003DMG400000008 I 0.702
POPTR_0014s07020 Populus trichocarpa POPTR_0014s07020 I 0.702
Sb07g026180 Sorghum bicolor Sb07g026180 I 0.702
AGL20 Arabidopsis lyrata scaffold_403512.1 I 0.702
Si014540m.g Setaria italica Si014540m.g I 0.702
TCM_014661 Theobroma cacao TCM_014661 I 0.702
Traes_4DL_5633C0561 Triticum aestivum Traes_4DL_5633C0561 I 0.702
TRIUR3_18962 Triticum urartu TRIUR3_18962 I 0.702
TRIUR3_27077 Triticum urartu TRIUR3_27077 I 0.702
Ca_16423 Cicer arietinum Ca_16423 I 0.702
cassava19939.m1 Manihot esculenta cassava19939.m1 I 0.702
mgf021705m Mimulus guttatus mgf021705m I 0.702
Bostr.25993s0208 Boechera stricta Bostr.25993s0208 I 0.702
Bostr.7867s0083 Boechera stricta Bostr.7867s0083 I 0.702
Cagra.0050s0134 Capsella grandiflora Cagra.0050s0134 I 0.702
Cagra.6745s0008 Capsella grandiflora Cagra.6745s0008 I 0.702
Carubv10005697m.g Capsella rubella Carubv10005697m.g I 0.702
Carubv10024046m.g Capsella rubella Carubv10024046m.g I 0.702
Eucgr.B00633 Eucalyptus grandis Eucgr.B00633 I 0.702
Eucgr.E00516 Eucalyptus grandis Eucgr.E00516 I 0.702
evm.TU.supercontig_18.166 Carica papaya evm.TU.supercontig_18.166 I 0.702
Gorai.007G093800 Gossypium raimondii Gorai.007G093800 I 0.702
Gorai.008G115200 Gossypium raimondii Gorai.008G115200 I 0.702
MDP0000205637 Malus domestica MDP0000205637 I 0.702
MDP0000248130 Malus domestica MDP0000248130 I 0.702
MDP0000270062 Malus domestica MDP0000270062 I 0.702
MDP0000574222 Malus domestica MDP0000574222 I 0.702
Pavir.J26790 Panicum virgatum Pavir.J26790 I 0.702
SapurV1A.0578s0130 Salix purpurea SapurV1A.0578s0130 I 0.702
Thhalv10001632m.g Eutrema salsugineum Thhalv10001632m.g I 0.702
chr4.CM0126.630.nc Lotus japonicus chr4.CM0126.630.nc I 0.702