Thhalv10005413m.g (Eutrema salsugineum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Thhalv10005413m.g T259116_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL27
M08145_2.00 		Arabidopsis thaliana
MCMAAAATRGAAAB
VTTTCYATTTTKGK		 ChIP-seq
Mathelier et al.(2014)
MA1012.1 		0.814 0.814
FLC
M06990_2.00 		Arabidopsis thaliana
WWDMYNDWWWWGGAAASW
WSTTTCCWWWWHNRKHWW		 Dap-seq
OMalley et al.(2016)
AGL25_col_a 		0.767 0.767
FLC
M06991_2.00 		Arabidopsis thaliana
WCYHAAAAWGGAAAS
STTTCCWTTTTDRGW		 Dap-seq
OMalley et al.(2016)
AGL25_colamp_a 		0.767 0.767
FLC
M08147_2.00 		Arabidopsis thaliana
NNWWDCYVAAAWWRGAAAVHH
DDBTTTCYWWTTTBRGHWWNN		 ChIP-seq
Mathelier et al.(2014)
MA0558.1 		0.767 0.767
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10005413m MADS box 10 52

Links

Other MADS box family TFs
Other Eutrema salsugineum TFs

23 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R010039 Calypte anna Aan_R010039 I
Afo_R012751 Aptenodytes forsteri Afo_R012751 I
Cmyd_10018130 Chelonia mydas Cmyd_10018130 I
DICVIV_13476 Dictyocaulus viviparus DICVIV_13476 I
ENSACAG00000008631 Anolis carolinensis ENSACAG00000008631 I
ENSAMEG00000009347 Ailuropoda melanoleuca ENSAMEG00000009347 I
ENSBTAG00000035623 Bos taurus ENSBTAG00000035623 I
ENSBTAG00000036115 Bos taurus ENSBTAG00000036115 I
ENSBTAG00000045938 Bos taurus ENSBTAG00000045938 I
ENSBTAG00000046306 Bos taurus ENSBTAG00000046306 I
ENSBTAG00000047168 Bos taurus ENSBTAG00000047168 I
ENSCAFG00000023024 Canis familiaris ENSCAFG00000023024 I
ENSCAFG00000025411 Canis familiaris ENSCAFG00000025411 I
ENSCAFG00000031919 Canis familiaris ENSCAFG00000031919 I
ENSCSAG00000007182 Chlorocebus sabaeus ENSCSAG00000007182 I
ENSCSAG00000018308 Chlorocebus sabaeus ENSCSAG00000018308 I
ENSDNOG00000043873 Dasypus novemcinctus ENSDNOG00000043873 I
ENSECAG00000000093 Equus caballus ENSECAG00000000093 I
ENSLACG00000012431 Latimeria chalumnae ENSLACG00000012431 I
ENSLOCG00000014483 Lepisosteus oculatus ENSLOCG00000014483 I
ENSMEUG00000003908 Macropus eugenii ENSMEUG00000003908 I
ENSMLUG00000015387 Myotis lucifugus ENSMLUG00000015387 I
ENSMLUG00000024907 Myotis lucifugus ENSMLUG00000024907 I
ENSMMUG00000002887 Macaca mulatta ENSMMUG00000002887 I
ENSMODG00000027398 Monodelphis domestica ENSMODG00000027398 I
ENSMODG00000028107 Monodelphis domestica ENSMODG00000028107 I
ENSOANG00000001091 Ornithorhynchus anatinus ENSOANG00000001091 I
ENSOANG00000012192 Ornithorhynchus anatinus ENSOANG00000012192 I
ENSOANG00000028803 Ornithorhynchus anatinus ENSOANG00000028803 I
ENSP00000359444 Macaca fascicularis ENSP00000359444 I
ENSPANG00000004032 Papio anubis ENSPANG00000004032 I
ENSPPYG00000019906 Pongo abelii ENSPPYG00000019906 I
ENSPTRG00000022495 Pan troglodytes ENSPTRG00000022495 I
ENSPTRG00000028817 Pan troglodytes ENSPTRG00000028817 I
ENSSSCG00000012734 Sus scrofa ENSSSCG00000012734 I
ENSVPAG00000003263 Vicugna pacos ENSVPAG00000003263 I
ENSVPAG00000003548 Vicugna pacos ENSVPAG00000003548 I
ENSVPAG00000004400 Vicugna pacos ENSVPAG00000004400 I
ENSVPAG00000004671 Vicugna pacos ENSVPAG00000004671 I
ENSVPAG00000005620 Vicugna pacos ENSVPAG00000005620 I
ENSVPAG00000006426 Vicugna pacos ENSVPAG00000006426 I
ENSVPAG00000007875 Vicugna pacos ENSVPAG00000007875 I
ENSVPAG00000007931 Vicugna pacos ENSVPAG00000007931 I
ENSVPAG00000010189 Vicugna pacos ENSVPAG00000010189 I
HSFX1 Homo sapiens ENSG00000171116 I
HSFX2 Homo sapiens ENSG00000268738 I
HSFY1 Homo sapiens ENSG00000172468 D
Hsfy2 Rattus norvegicus ENSRNOG00000038569 I
Hsfy2 Mus musculus ENSMUSG00000045336 I
HSFY2 Homo sapiens ENSG00000169953 D
Ogr08578 Ophisaurus gracilis Ogr08578 I
Pvit_14501 Pogona vitticeps Pvit_14501 I