chr6.LjT19B22.120.nd (Lotus japonicus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 chr6.LjT19B22.120.nd T259349_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.804 0.804
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr6.LjT19B22.120.nd MADS box 10 56

Links

Other MADS box family TFs
Other Lotus japonicus TFs

106 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA002940 Oryza indica BGIOSGA002940 N
BGIOSGA002943 Oryza indica BGIOSGA002943 N
Cla011379 Citrullus lanatus Cla011379 N
Cucsa.155340 Cucumis sativus Cucsa.155340 N
F775_21644 Aegilops tauschii F775_21644 N
GRMZM2G132550 Zea mays GRMZM2G132550 N
GRMZM2G333582 Zea mays GRMZM2G333582 N
GRMZM2G397755 Zea mays GRMZM2G397755 N
LPERR01G05820 Leersia perrieri LPERR01G05820 N
MLOC_21524 Hordeum vulgare MLOC_21524 N
OB01G16120 Oryza brachyantha OB01G16120 N
OBART01G06120 Oryza barthii OBART01G06120 N
OBART01G06170 Oryza barthii OBART01G06170 N
OGLUM01G06690 Oryza glumaepatula OGLUM01G06690 N
OGLUM01G06730 Oryza glumaepatula OGLUM01G06730 N
OMERI01G06310 Oryza meridionalis OMERI01G06310 N
ONIVA01G07080 Oryza nivara ONIVA01G07080 N
ONIVA01G07190 Oryza nivara ONIVA01G07190 N
OPUNC01G05940 Oryza punctata OPUNC01G05940 N
ORGLA01G0058200 Oryza glaberrima ORGLA01G0058200 N
ORGLA01G0397100 Oryza glaberrima ORGLA01G0397100 N
ORGLA08G0199700 Oryza glaberrima ORGLA08G0199700 N
ORUFI01G06710 Oryza rufipogon ORUFI01G06710 N
OS01G0195801 Oryza sativa OS01G0195801 N
OS01G0196300 Oryza sativa OS01G0196300 N
Pavir.Ba03537 Panicum virgatum Pavir.Ba03537 N
Pavir.Ea00369 Panicum virgatum Pavir.Ea00369 N
Sb03g002910 Sorghum bicolor Sb03g002910 N
Sb09g006220 Sorghum bicolor Sb09g006220 N
Si001328m.g Setaria italica Si001328m.g N
TRAES3BF075700010CFD_g Triticum aestivum TRAES3BF075700010CFD_g N
TRAES3BF076600020CFD_g Triticum aestivum TRAES3BF076600020CFD_g N
Traes_3AS_037375C84 Triticum aestivum Traes_3AS_037375C84 N
Traes_3B_99CDB9674 Triticum aestivum Traes_3B_99CDB9674 N
TRIUR3_35423 Triticum urartu TRIUR3_35423 N