mecp2 (Tetraodon nigroviridis)
MBD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01429 (MBD) IPR001739 ENSTNIG00000005114 T260455_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Mecp2
M00806_2.00 		Mus musculus
NNNNNHAHNN
NNDTDNNNNN		 PBM
Weirauch et al.(2013)
pTH3054 		0.887 0.887
MECP2
M09257_2.00 		Homo sapiens
SCCGGRR
YYCCGGS		 Misc
Kulakovskiy et al.(2013)
MECP2_HUMAN.H11MO.0.C 		0.887 0.887
Mecp2
M09259_2.00 		Mus musculus
SCCGGRR
YYCCGGS		 Misc
Kulakovskiy et al.(2013)
MECP2_MOUSE.H11MO.0.C 		0.887 0.887
MECP2
M11032_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MECP2_01 		0.887 0.887
MECP2
M11033_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MECP2_02 		0.887 0.887
MECP2
M11034_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MECP2_Q4_01 		0.887 0.887
MECP2
M11035_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MECP2_Q4 		0.887 0.887
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000001935 MBD 26 96
ENSTNIP00000007782 MBD 26 96

Links

Other MBD family TFs
Other Tetraodon nigroviridis TFs

61 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ALNC14_059010 Albugo laibachii ALNC14_059010 N
estExt_fgenesh1_pg.C_80097 Phytophthora capsici estExt_fgenesh1_pg.C_80097 N
F443_18208 Phytophthora parasitica F443_18208 N
fgenesh_scip_prom.28083.8498 Phytophthora lateralis fgenesh_scip_prom.28083.8498 N
gw1.2.1819.1 Fragilariopsis cylindrus gw1.2.1819.1 I
maker-piw_contig_292-fgenesh-gene-0.2 Pythium iwayamai maker-piw_contig_292-fgenesh-gene-0.2 N
maker-pve_contig_274-fgenesh-gene-0.2 Pythium vexans maker-pve_contig_274-fgenesh-gene-0.2 N
Phyra76681 Phytophthora ramorum Phyra76681 N
Physo140584 Phytophthora sojae Physo140584 N
PITG_13032 Phytophthora infestans PITG_13032 N
PYU1_G000358 Pythium ultimum PYU1_G000358 N
snap_masked-par_contig_136-abinit-gene-0.22 Pythium arrhenomanes snap_masked-par_contig_136-abinit-gene-0.22 N
SPRG_02234 Saprolegnia parasitica SPRG_02234 N