CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bra018598 *(Brassica rapa)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00249 (Myb_DNA-binding)	IPR014778	Bra018598	T267908_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
MYB60 M07001_2.00	Arabidopsis thaliana	HNNHYYCAACYACYWHHNN	NNDDWRGTRGTTGRRDNND	Dap-seq OMalley et al.(2016) MYB60_col	0.903	0.978
MYB30 M07089_2.00	Arabidopsis thaliana	NHHHCAACYACYWHH	DDWRGTRGTTGDDDN	Dap-seq OMalley et al.(2016) MYB30_col_a	0.866	0.903
MYB30 M07090_2.00	Arabidopsis thaliana	HHHYYHCCAACYAMY	RKTRGTTGGDRRDDD	Dap-seq OMalley et al.(2016) MYB30_colamp_a	0.866	0.903
MYB94 M02298_2.00	Arabidopsis thaliana	DACCGGTH	DACCGGTH	PBM Weirauch et al.(2014) pTH7085	0.852	0.903
MYB94 M07094_2.00	Arabidopsis thaliana	HHNYHYCAACYACYWHHNN	NNDDWRGTRGTTGRDRNDD	Dap-seq OMalley et al.(2016) MYB94_col_b	0.852	0.903
ATY13 M07035_2.00	Arabidopsis thaliana	HAMCHMCCAMCHAHH	DDTDGKTGGKDGKTD	Dap-seq OMalley et al.(2016) ATY13_col_a	0.835	0.903
ATY13 M07036_2.00	Arabidopsis thaliana	HAMCHHCCAACHAHH	DDTDGTTGGDDGKTD	Dap-seq OMalley et al.(2016) ATY13_colamp_a	0.835	0.903
MYB96 M07153_2.00	Arabidopsis thaliana	HHHHHYHHCCAACYAHYWNHN	NDNWRDTRGTTGGDDRDDDDD	Dap-seq OMalley et al.(2016) MYB96_colamp_a	0.827	0.892
MYB96 M07154_2.00	Arabidopsis thaliana	YAMCHNCCAMCHAHHHHH	DDDDDTDGKTGGNDGKTR	Dap-seq OMalley et al.(2016) MYB96_col_b	0.827	0.892
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Bra018598.1-P	Myb	14	61	KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLPRCSKSCRLRWTNYL
Bra018598.1-P	Myb	67	112	RGNFTPHEEGMIIHLQTLLGNKWASIASYLPQRTDNDIKNYWNTHL

Links
Other Myb/SANT family TFs
Other *Brassica rapa* TFs

310 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Gorai.010G132200	Gossypium raimondii	Gorai.010G132200	N	0.000
Gorai.010G132900	Gossypium raimondii	Gorai.010G132900	N	0.000
Gorai.010G133000	Gossypium raimondii	Gorai.010G133000	N	0.000
Gorai.010G133100	Gossypium raimondii	Gorai.010G133100	N	0.000
Gorai.010G133300	Gossypium raimondii	Gorai.010G133300	N	0.000
Gorai.012G148000	Gossypium raimondii	Gorai.012G148000	N	0.000